RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNF157P51786 506 aaPredicted RBP26.12■■□□□ 1.77
SDC3-202ENST00000339394 ICA1Q05084 483 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 PPATQ06203 517 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 SIAH1Q8IUQ4 282 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 HHIPL1Q96JK4 782 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 TM6SF1Q9BZW5 370 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 CPA1P15085 419 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 BLOC1S2Q6QNY1 142 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 DHX32Q7L7V1 743 aaKnown RBP26.12■■□□□ 1.77
SDC3-202ENST00000339394 OTUD5Q96G74 571 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 ZSCAN10Q96SZ4 725 aaPredicted RBP26.12■■□□□ 1.77
SDC3-202ENST00000339394 ZSWIM6Q9HCJ5 1215 aa26.12■■□□□ 1.77
SDC3-202ENST00000339394 PRC1O43663 620 aa26.11■■□□□ 1.77
SDC3-202ENST00000339394 EEF2P13639 858 aaKnown RBP26.11■■□□□ 1.77
SDC3-202ENST00000339394 EXOSC10Q01780 885 aaKnown RBP26.11■■□□□ 1.77
SDC3-202ENST00000339394 UBAC1Q9BSL1 405 aa26.11■■□□□ 1.77
SDC3-202ENST00000339394 STX8Q9UNK0 236 aa26.11■■□□□ 1.77
SDC3-202ENST00000339394 AFG3L2Q9Y4W6 797 aa26.11■■□□□ 1.77
SDC3-202ENST00000339394 TTLL1O95922 423 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 GJA5P36382 358 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 NOVP48745 357 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 ATP2B2Q01814 1243 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 ZNF280CQ8ND82 737 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 ACER1Q8TDN7 264 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 KIF2CQ99661 725 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 WDR18Q9BV38 432 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 AS3MTQ9HBK9 375 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 TNKSO95271 1327 aa26.1■■□□□ 1.77
SDC3-202ENST00000339394 OTOFQ9HC10 1997 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 A0A1W2PRG0 241 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 IRF6O14896 467 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 HTRA3P83110 453 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 SPP2Q13103 211 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 RUFY3Q7L099 469 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 TCEANC2Q96MN5 208 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 TBC1D2Q9BYX2 928 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 UPF3BQ9BZI7 483 aaKnown RBP26.09■■□□□ 1.77
SDC3-202ENST00000339394 NYAP2Q9P242 653 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 CLIP2Q9UDT6 1046 aa26.09■■□□□ 1.77
SDC3-202ENST00000339394 TRIM75PA6NK02 468 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 RASSF10A6NK89 507 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 IFIT3O14879 490 aaKnown RBP26.08■■□□□ 1.77
SDC3-202ENST00000339394 RPS6KB1P23443 525 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 ECE1P42892 770 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 PPIL2Q13356 520 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 DEFB115Q30KQ5 88 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 RCSD1Q6JBY9 416 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 DGKHQ86XP1 1220 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 ENAHQ8N8S7 591 aaPredicted RBP26.08■■□□□ 1.77
SDC3-202ENST00000339394 IGDCC4Q8TDY8 1250 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 WNK4Q96J92 1243 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 TTC14Q96N46 770 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 LRRC2Q9BYS8 371 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 CYP46A1Q9Y6A2 500 aa26.08■■□□□ 1.77
SDC3-202ENST00000339394 SART3Q15020 963 aaKnown RBP26.07■■□□□ 1.76
SDC3-202ENST00000339394 CCDC178Q5BJE1 867 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 PPP4R3BQ5MIZ7 849 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 SPRYD7Q5W111 196 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 RASAL3Q86YV0 1011 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 MTA3Q9BTC8 594 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 ARHGEF10LQ9HCE6 1279 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 HSPA6P17066 643 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 MKRN3Q13064 507 aaKnown RBP26.07■■□□□ 1.76
SDC3-202ENST00000339394 SEC23AQ15436 765 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 MKL1Q969V6 931 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 TMEM87BQ96K49 555 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 DOCK1Q14185 1865 aa26.07■■□□□ 1.76
SDC3-202ENST00000339394 WDR19Q8NEZ3 1342 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 ERICH2A1L162 156 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 USP17L10C9JJH3 530 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 ZBTB48P10074 688 aaPredicted RBP26.06■■□□□ 1.76
SDC3-202ENST00000339394 TMEM67Q5HYA8 995 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 PAXIP1Q6ZW49 1069 aaPredicted RBP26.06■■□□□ 1.76
SDC3-202ENST00000339394 ANKS1AQ92625 1134 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 CCDC102AQ96A19 550 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 GPHNQ9NQX3 736 aaPredicted RBP26.06■■□□□ 1.76
SDC3-202ENST00000339394 TMX2Q9Y320 296 aa26.06■■□□□ 1.76
SDC3-202ENST00000339394 CXCL11O14625 94 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 SLC10A3P09131 477 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 BACE1P56817 501 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 MTMR2Q13614 643 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 CYP4F22Q6NT55 531 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 TMEM47Q9BQJ4 181 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 KCNH4Q9UQ05 1017 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 MYH8P13535 1937 aa26.05■■□□□ 1.76
SDC3-202ENST00000339394 FAM155AB1AL88 458 aaPredicted RBP26.04■■□□□ 1.76
SDC3-202ENST00000339394 IFIT1BQ5T764 474 aaKnown RBP26.04■■□□□ 1.76
SDC3-202ENST00000339394 FEZ1Q99689 392 aa26.04■■□□□ 1.76
SDC3-202ENST00000339394 SENP2Q9HC62 589 aa26.04■■□□□ 1.76
SDC3-202ENST00000339394 GREB1LQ9C091 1923 aaPredicted RBP26.04■■□□□ 1.76
SDC3-202ENST00000339394 SH2B2O14492 632 aaPredicted RBP26.03■■□□□ 1.76
SDC3-202ENST00000339394 WTAPQ15007 396 aa26.03■■□□□ 1.76
SDC3-202ENST00000339394 LRRC47Q8N1G4 583 aaKnown RBP26.03■■□□□ 1.76
SDC3-202ENST00000339394 KIAA1683Q9H0B3 1180 aa26.03■■□□□ 1.76
SDC3-202ENST00000339394 SH2D4AQ9H788 454 aa26.03■■□□□ 1.76
SDC3-202ENST00000339394 LY9Q9HBG7 655 aa26.03■■□□□ 1.76
SDC3-202ENST00000339394 TOP1P11387 765 aaKnown RBP26.03■■□□□ 1.76
SDC3-202ENST00000339394 GRM1Q13255 1194 aa26.03■■□□□ 1.76
SDC3-202ENST00000339394 ZYXQ15942 572 aaKnown RBP26.03■■□□□ 1.76
SDC3-202ENST00000339394 C19orf81C9J6K1 198 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms