RNA–Protein interactions for RNA: ENST00000278412.6

SSRP1-201, Transcript of structure specific recognition protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSRP1, Length 2,819 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-201ENST00000278412 CLEC17AQ6ZS10 378 aa13.66□□□□□ -0.22
SSRP1-201ENST00000278412 USP48Q86UV5 1035 aa13.66□□□□□ -0.22
SSRP1-201ENST00000278412 TMEM47Q9BQJ4 181 aa13.66□□□□□ -0.22
SSRP1-201ENST00000278412 WNT10BO00744 389 aa13.66□□□□□ -0.22
SSRP1-201ENST00000278412 FKBP1AP62942 108 aaKnown RBP13.66□□□□□ -0.22
SSRP1-201ENST00000278412 MIGA2Q7L4E1 593 aa13.66□□□□□ -0.22
SSRP1-201ENST00000278412 CCDC84Q86UT8 332 aaPredicted RBP13.66□□□□□ -0.22
SSRP1-201ENST00000278412 SRBD1Q8N5C6 995 aaKnown RBP13.66□□□□□ -0.22
SSRP1-201ENST00000278412 LLPHQ9BRT6 129 aaKnown RBP13.66□□□□□ -0.22
SSRP1-201ENST00000278412 ZNF70Q9UC06 446 aaPredicted RBP13.66□□□□□ -0.22
SSRP1-201ENST00000278412 MPHOSPH10O00566 681 aaKnown RBP13.65□□□□□ -0.22
SSRP1-201ENST00000278412 FUT2Q10981 343 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 DLGAP5Q15398 846 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 AMOTL1Q8IY63 956 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 MYH8P13535 1937 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 ATP2B2Q01814 1243 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 NOM1Q5C9Z4 860 aaKnown RBP13.65□□□□□ -0.22
SSRP1-201ENST00000278412 PNMA1Q8ND90 353 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 ALG1Q9BT22 464 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 CNTNAP1P78357 1384 aa13.65□□□□□ -0.22
SSRP1-201ENST00000278412 SOGA3Q5TF21 947 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 USP17L2Q6R6M4 530 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 OGFOD1Q8N543 542 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 V9GY48 417 aaPredicted RBP13.64□□□□□ -0.23
SSRP1-201ENST00000278412 TMED8Q6PL24 325 aaPredicted RBP13.64□□□□□ -0.23
SSRP1-201ENST00000278412 SYNE3Q6ZMZ3 975 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 MICALL2Q8IY33 904 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 CRACR2BQ8N4Y2 399 aaPredicted RBP13.64□□□□□ -0.23
SSRP1-201ENST00000278412 C8orf76Q96K31 380 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 IDI2Q9BXS1 227 aa13.64□□□□□ -0.23
SSRP1-201ENST00000278412 CATIPQ7Z7H3 387 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 CSRNP1Q96S65 589 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 MYOZ2Q9NPC6 264 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 FRMPD2Q68DX3 1309 aaPredicted RBP13.63□□□□□ -0.23
SSRP1-201ENST00000278412 FAM205CA6NFA0 338 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 PKN1Q16512 942 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 TTC6Q86TZ1 520 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 NEDD1Q8NHV4 660 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 OXER1Q8TDS5 423 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 VPS54Q9P1Q0 977 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 MYH6P13533 1939 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 CYTH3O43739 400 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 RAD21O60216 631 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 HMGN5P82970 282 aaKnown RBP13.63□□□□□ -0.23
SSRP1-201ENST00000278412 HDLBPQ00341 1268 aaKnown RBP13.63□□□□□ -0.23
SSRP1-201ENST00000278412 KRT40Q6A162 431 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 FBXO18Q8NFZ0 1043 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 KAT14Q9H8E8 782 aa13.63□□□□□ -0.23
SSRP1-201ENST00000278412 ARFGEF1Q9Y6D6 1849 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 DDX11L8A8MPP1 907 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 USP17L5A8MUK1 530 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 FZD9O00144 591 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 IFNAR1P17181 557 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 GPKOWQ92917 476 aaPredicted RBP eCLIP13.62□□□□□ -0.23
SSRP1-201ENST00000278412 DDX49Q9Y6V7 483 aaKnown RBP13.62□□□□□ -0.23
SSRP1-201ENST00000278412 FMNL1O95466 1100 aaPredicted RBP13.62□□□□□ -0.23
SSRP1-201ENST00000278412 PCP11498 1178 aaKnown RBP13.62□□□□□ -0.23
SSRP1-201ENST00000278412 PDCP20941 246 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 NR5A1Q13285 461 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 SEPT2Q15019 361 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 TRPM4Q8TD43 1214 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 MRIQ9BWK5 157 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 UBA5Q9GZZ9 404 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 CLIP2Q9UDT6 1046 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 MAD2L2Q9UI95 211 aa13.62□□□□□ -0.23
SSRP1-201ENST00000278412 CNOT7Q9UIV1 285 aaKnown RBP13.62□□□□□ -0.23
SSRP1-201ENST00000278412 DHX16O60231 1041 aaKnown RBP13.61□□□□□ -0.23
SSRP1-201ENST00000278412 SSRP1Q08945 709 aaKnown RBP13.61□□□□□ -0.23
SSRP1-201ENST00000278412 SPDYE2Q495Y8 402 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 GRIPAP1Q4V328 841 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 TMTC3Q6ZXV5 915 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 SIAH1Q8IUQ4 282 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 USP28Q96RU2 1077 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 MTMR4Q9NYA4 1195 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 CNTNAP5Q8WYK1 1306 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 SBF1O95248 1867 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 DDNO94850 711 aaPredicted RBP13.61□□□□□ -0.23
SSRP1-201ENST00000278412 TAL1P17542 331 aaPredicted RBP13.61□□□□□ -0.23
SSRP1-201ENST00000278412 EPS15P42566 896 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 EARS2Q5JPH6 523 aaKnown RBP13.61□□□□□ -0.23
SSRP1-201ENST00000278412 CAVIN1Q6NZI2 390 aaKnown RBP13.61□□□□□ -0.23
SSRP1-201ENST00000278412 VAT1LQ9HCJ6 419 aa13.61□□□□□ -0.23
SSRP1-201ENST00000278412 TYW1BQ6NUM6 668 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 TMTC2Q8N394 836 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 AGBL3Q8NEM8 1001 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 ZBED3Q96IU2 234 aaPredicted RBP13.6□□□□□ -0.23
SSRP1-201ENST00000278412 BTBD18B2RXH4 712 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 HLA-DOAP06340 250 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 KIF23Q02241 960 aaPredicted RBP13.6□□□□□ -0.23
SSRP1-201ENST00000278412 TTBK2Q6IQ55 1244 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 DGKHQ86XP1 1220 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 CERS3Q8IU89 383 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 NUP88Q99567 741 aaPredicted RBP13.6□□□□□ -0.23
SSRP1-201ENST00000278412 PI4KBQ9UBF8 816 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 NID2Q14112 1375 aa13.6□□□□□ -0.23
SSRP1-201ENST00000278412 POLR2AP24928 1970 aaKnown RBP13.6□□□□□ -0.23
SSRP1-201ENST00000278412 WNT7AO00755 349 aa13.59□□□□□ -0.23
SSRP1-201ENST00000278412 IGSF3O75054 1194 aa13.59□□□□□ -0.23
SSRP1-201ENST00000278412 DGKZQ13574 1117 aa13.59□□□□□ -0.23
SSRP1-201ENST00000278412 HDAC9Q9UKV0 1011 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms