RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PIK3AP1Q6ZUJ8 805 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 IQCA1Q86XH1 822 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 PLA2G12BQ9BX93 195 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 FOXP1Q9H334 677 aaPredicted RBP14.36□□□□□ -0.11
LIG1-201ENST00000263274 TAB2Q9NYJ8 693 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 GOLGA6L9A6NEM1 432 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 TMTC2Q8N394 836 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 GOLGA1Q92805 767 aa14.36□□□□□ -0.11
LIG1-201ENST00000263274 PCMTD1Q96MG8 357 aaPredicted RBP14.36□□□□□ -0.11
LIG1-201ENST00000263274 SRPRBQ9Y5M8 271 aaKnown RBP14.36□□□□□ -0.11
LIG1-201ENST00000263274 MST1RQ04912 1400 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 PHACTR2O75167 634 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 PLCD1P51178 756 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 CCDC24Q8N4L8 307 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 ACRBPQ8NEB7 543 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 RIC1Q4ADV7 1423 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 MROH5Q6ZUA9 1318 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 EXOC5O00471 708 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 GPIHBP1Q8IV16 184 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 VGLL2Q8N8G2 317 aa14.35□□□□□ -0.11
LIG1-201ENST00000263274 CYP19A1P11511 503 aaPredicted RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 ARID4AP29374 1257 aaPredicted RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 PTGDRQ13258 359 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 MORC3Q14149 939 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 SMC1AQ14683 1233 aaKnown RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 ANKRD20A12PQ8NF67 263 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 SLC4A9Q96Q91 983 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 CDC5LQ99459 802 aaKnown RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 NMT2O60551 498 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 CD44P16070 742 aaKnown RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 LMAN1P49257 510 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 CHMP4BP1P59074 171 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 MDM2Q00987 491 aaPredicted RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 JAKMIP3Q5VZ66 844 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 SLF1Q9BQI6 1058 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 SOS2Q07890 1332 aaPredicted RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 A0A087X0B3 334 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 ATP6V1AP38606 617 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 KCNJ6P48051 423 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 IRX3P78415 501 aaPredicted RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 CCDC152Q4G0S7 254 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 RAD9BQ6WBX8 426 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 CTCFLQ8NI51 663 aaPredicted RBP14.34□□□□□ -0.11
LIG1-201ENST00000263274 PAGE5Q96GU1 130 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 CALCOCO1Q9P1Z2 691 aa14.34□□□□□ -0.11
LIG1-201ENST00000263274 CHRNDQ07001 517 aa14.33□□□□□ -0.11
LIG1-201ENST00000263274 NKX1-1Q15270 411 aaPredicted RBP14.33□□□□□ -0.11
LIG1-201ENST00000263274 TMEM139Q8IV31 216 aa14.33□□□□□ -0.11
LIG1-201ENST00000263274 KCND1Q9NSA2 647 aa14.33□□□□□ -0.11
LIG1-201ENST00000263274 GUCA1BQ9UMX6 200 aa14.33□□□□□ -0.11
LIG1-201ENST00000263274 USP54Q70EL1 1684 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 SIPA1L3O60292 1781 aaPredicted RBP14.33□□□□□ -0.12
LIG1-201ENST00000263274 USP17L12C9JPN9 530 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 USP17L21D6R901 530 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 WNT7AO00755 349 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 ACTN4O43707 911 aaKnown RBP14.33□□□□□ -0.12
LIG1-201ENST00000263274 GNAT2P19087 354 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 HSPA1LP34931 641 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 ST5P78524 1137 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 GPS2Q13227 327 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 TTC38Q5R3I4 469 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 SPATA1Q5VX52 437 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 WWC2Q6AWC2 1192 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 TSR1Q2NL82 804 aaKnown RBP14.33□□□□□ -0.12
LIG1-201ENST00000263274 CC2D1AQ6P1N0 951 aaPredicted RBP14.33□□□□□ -0.12
LIG1-201ENST00000263274 ADGRA1Q86SQ6 560 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 GPR161Q8N6U8 529 aaKnown RBP14.33□□□□□ -0.12
LIG1-201ENST00000263274 CCDC102AQ96A19 550 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 MED15Q96RN5 788 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 HINFPQ9BQA5 517 aa14.33□□□□□ -0.12
LIG1-201ENST00000263274 GNL3LQ9NVN8 582 aaKnown RBP14.33□□□□□ -0.12
LIG1-201ENST00000263274 CDHR2Q9BYE9 1310 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 KCNQ4P56696 695 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 ALX1Q15699 326 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 SLC35F6Q8N357 371 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 MAP3K9P80192 1104 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 NR1I3Q14994 352 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 SMIM5Q71RC9 77 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 FCHSD1Q86WN1 690 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 ENAHQ8N8S7 591 aaPredicted RBP14.32□□□□□ -0.12
LIG1-201ENST00000263274 RASGRP4Q8TDF6 673 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 STAG1Q8WVM7 1258 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 ZSCAN10Q96SZ4 725 aaPredicted RBP14.32□□□□□ -0.12
LIG1-201ENST00000263274 MRFAP1Q9Y605 127 aa14.32□□□□□ -0.12
LIG1-201ENST00000263274 SASH3O75995 380 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 EVX2Q03828 476 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 UBXN1Q04323 297 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 AATFQ9NY61 560 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIG1-201ENST00000263274 ABCC12Q96J65 1359 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 STK36Q9NRP7 1315 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 CTAGE9A4FU28 777 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 TSPY2A6NKD2 308 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 KRT9P35527 623 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 FXR1P51114 621 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIG1-201ENST00000263274 HNRNPH2P55795 449 aaKnown RBP14.31□□□□□ -0.12
LIG1-201ENST00000263274 ZNF18P17022 549 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 MEX3CQ5U5Q3 659 aaKnown RBP14.31□□□□□ -0.12
LIG1-201ENST00000263274 SUGCTQ9HAC7 445 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 ADGRG1Q9Y653 693 aa14.31□□□□□ -0.12
LIG1-201ENST00000263274 ABL1P00519 1130 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms