RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 RPTORQ8N122 1335 aa21.87■■□□□ 1.09
CIITA-215ENST00000637439 SURF6O75683 361 aaKnown RBP21.87■■□□□ 1.09
CIITA-215ENST00000637439 PAWRQ96IZ0 340 aaKnown RBP21.87■■□□□ 1.09
CIITA-215ENST00000637439 HMX1Q9NP08 348 aaPredicted RBP21.87■■□□□ 1.09
CIITA-215ENST00000637439 CDK5RAP2Q96SN8 1893 aa21.87■■□□□ 1.09
CIITA-215ENST00000637439 USP17L10C9JJH3 530 aa21.86■■□□□ 1.09
CIITA-215ENST00000637439 HLA-DOAP06340 250 aa21.86■■□□□ 1.09
CIITA-215ENST00000637439 CERS3Q8IU89 383 aa21.86■■□□□ 1.09
CIITA-215ENST00000637439 PALD1Q9ULE6 856 aa21.86■■□□□ 1.09
CIITA-215ENST00000637439 ADGRA1Q86SQ6 560 aa21.85■■□□□ 1.09
CIITA-215ENST00000637439 GPRC5AQ8NFJ5 357 aa21.85■■□□□ 1.09
CIITA-215ENST00000637439 GTF3C2Q8WUA4 911 aaPredicted RBP21.85■■□□□ 1.09
CIITA-215ENST00000637439 DNAJC18Q9H819 358 aa21.85■■□□□ 1.09
CIITA-215ENST00000637439 NOP58Q9Y2X3 529 aaKnown RBP21.85■■□□□ 1.09
CIITA-215ENST00000637439 ZAP70P43403 619 aa21.84■■□□□ 1.09
CIITA-215ENST00000637439 HERVK_113P62684 666 aa21.84■■□□□ 1.09
CIITA-215ENST00000637439 SOCS4Q8WXH5 440 aa21.84■■□□□ 1.09
CIITA-215ENST00000637439 P2RX7Q99572 595 aaKnown RBP21.84■■□□□ 1.09
CIITA-215ENST00000637439 ZBTB21Q9ULJ3 1066 aa21.84■■□□□ 1.09
CIITA-215ENST00000637439 SZT2Q5T011 3432 aa21.84■■□□□ 1.09
CIITA-215ENST00000637439 TMED8Q6PL24 325 aaPredicted RBP21.83■■□□□ 1.09
CIITA-215ENST00000637439 FTSJ3Q8IY81 847 aaKnown RBP21.83■■□□□ 1.09
CIITA-215ENST00000637439 TRMT44Q8IYL2 757 aaKnown RBP21.83■■□□□ 1.09
CIITA-215ENST00000637439 NUDT12Q9BQG2 462 aa21.83■■□□□ 1.09
CIITA-215ENST00000637439 MYO5AQ9Y4I1 1855 aaKnown RBP21.82■■□□□ 1.08
CIITA-215ENST00000637439 GDF11O95390 407 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 XRCC5P13010 732 aaKnown RBP21.82■■□□□ 1.08
CIITA-215ENST00000637439 CYP7A1P22680 504 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 MAPK4P31152 587 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 JAG1P78504 1218 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 PDE3AQ14432 1141 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 CCAR1Q8IX12 1150 aaKnown RBP21.82■■□□□ 1.08
CIITA-215ENST00000637439 NBPF3Q9H094 633 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 PIH1D3Q9NQM4 214 aaKnown RBP21.82■■□□□ 1.08
CIITA-215ENST00000637439 SAP30BPQ9UHR5 308 aaKnown RBP21.82■■□□□ 1.08
CIITA-215ENST00000637439 DBNLQ9UJU6 430 aaKnown RBP21.82■■□□□ 1.08
CIITA-215ENST00000637439 PLXNB2O15031 1838 aa21.82■■□□□ 1.08
CIITA-215ENST00000637439 USP17L2Q6R6M4 530 aa21.81■■□□□ 1.08
CIITA-215ENST00000637439 DIS3LQ8TF46 1054 aaKnown RBP21.81■■□□□ 1.08
CIITA-215ENST00000637439 TRIB2Q92519 343 aa21.81■■□□□ 1.08
CIITA-215ENST00000637439 IDH1O75874 414 aaKnown RBP21.8■■□□□ 1.08
CIITA-215ENST00000637439 CYP2B6P20813 491 aa21.8■■□□□ 1.08
CIITA-215ENST00000637439 DYNLL1P63167 89 aaKnown RBP21.8■■□□□ 1.08
CIITA-215ENST00000637439 TRIM32Q13049 653 aa21.8■■□□□ 1.08
CIITA-215ENST00000637439 ITPRIPQ8IWB1 547 aa21.8■■□□□ 1.08
CIITA-215ENST00000637439 C1orf115Q9H7X2 142 aa21.8■■□□□ 1.08
CIITA-215ENST00000637439 TXNRD2Q9NNW7 524 aa21.8■■□□□ 1.08
CIITA-215ENST00000637439 RBPJLQ9UBG7 517 aa21.8■■□□□ 1.08
CIITA-215ENST00000637439 MYH1P12882 1939 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 ALPK3Q96L96 1907 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 USP5P45974 858 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 ERVK-9P63128 1117 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 ERVK-24P63145 666 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 MAP3K21Q5TCX8 1036 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 CCDC8Q9H0W5 538 aaPredicted RBP21.79■■□□□ 1.08
CIITA-215ENST00000637439 OGDHLQ9ULD0 1010 aa21.79■■□□□ 1.08
CIITA-215ENST00000637439 PRKAR2AP13861 404 aaKnown RBP21.78■■□□□ 1.08
CIITA-215ENST00000637439 MAP3K12Q12852 859 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 TATDN1Q6P1N9 297 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 EAF2Q96CJ1 260 aaPredicted RBP21.78■■□□□ 1.08
CIITA-215ENST00000637439 EHD4Q9H223 541 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 C11orf49Q9H6J7 331 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 EMILIN3Q9NT22 766 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 TLR7Q9NYK1 1049 aaKnown RBP21.78■■□□□ 1.08
CIITA-215ENST00000637439 STAP2Q9UGK3 403 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 SERPINB13Q9UIV8 391 aa21.78■■□□□ 1.08
CIITA-215ENST00000637439 GH2P01242 217 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 ZKSCAN1P17029 563 aaPredicted RBP21.77■■□□□ 1.08
CIITA-215ENST00000637439 RGS2P41220 211 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 SHROOM1Q2M3G4 852 aaPredicted RBP21.77■■□□□ 1.08
CIITA-215ENST00000637439 TTC6Q86TZ1 520 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 ERC1Q8IUD2 1116 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 C7orf61Q8IZ16 206 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 MAGEB6Q8N7X4 407 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 MIGA1Q8NAN2 632 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 C12orf42Q96LP6 360 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 FEZ1Q99689 392 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 PAGR1Q9BTK6 254 aa21.77■■□□□ 1.08
CIITA-215ENST00000637439 USP17L15C9J2P7 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L13C9JLJ4 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L11C9JVI0 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L18D6R9N7 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L22D6RA61 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L17D6RBQ6 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L19D6RCP7 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L20D6RJB6 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 BMP8BP34820 402 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP14P54578 494 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP17L24Q0WX57 530 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 DDX60LQ5H9U9 1706 aaKnown RBP21.76■■□□□ 1.07
CIITA-215ENST00000637439 GPR142Q7Z601 462 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 PLEKHH3Q7Z736 793 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 USP6NLQ92738 828 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 CWC22Q9HCG8 908 aaKnown RBP21.76■■□□□ 1.07
CIITA-215ENST00000637439 RABGAP1Q9Y3P9 1069 aa21.76■■□□□ 1.07
CIITA-215ENST00000637439 PEX10O60683 326 aa21.75■■□□□ 1.07
CIITA-215ENST00000637439 GLRX3O76003 335 aaKnown RBP21.75■■□□□ 1.07
CIITA-215ENST00000637439 MNX1P50219 401 aaPredicted RBP21.75■■□□□ 1.07
CIITA-215ENST00000637439 CCNA1P78396 465 aa21.75■■□□□ 1.07
CIITA-215ENST00000637439 Q3C1V9 767 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms