RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 CDK5RAP2Q96SN8 1893 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 ALPK3Q96L96 1907 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 BMP8BP34820 402 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 MTMR2Q13614 643 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 POTEEQ6S8J3 1075 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 TGFBRAP1Q8WUH2 860 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 NOL10Q9BSC4 688 aaKnown RBP20.16■□□□□ 0.82
CLN3-255ENST00000637100 SNRKQ9NRH2 765 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 RBPJLQ9UBG7 517 aa20.16■□□□□ 0.82
CLN3-255ENST00000637100 USP17L10C9JJH3 530 aa20.15■□□□□ 0.82
CLN3-255ENST00000637100 HERVK_113P62684 666 aa20.15■□□□□ 0.82
CLN3-255ENST00000637100 TMED8Q6PL24 325 aaPredicted RBP20.15■□□□□ 0.82
CLN3-255ENST00000637100 DIS3LQ8TF46 1054 aaKnown RBP20.15■□□□□ 0.82
CLN3-255ENST00000637100 TRIB2Q92519 343 aa20.15■□□□□ 0.82
CLN3-255ENST00000637100 CLUAP1Q96AJ1 413 aa20.15■□□□□ 0.82
CLN3-255ENST00000637100 TXNRD2Q9NNW7 524 aa20.15■□□□□ 0.82
CLN3-255ENST00000637100 HMX1Q9NP08 348 aaPredicted RBP20.15■□□□□ 0.82
CLN3-255ENST00000637100 ZAP70P43403 619 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 TRIM32Q13049 653 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 TTC39AQ5SRH9 613 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 ZKSCAN2Q63HK3 967 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 TATDN1Q6P1N9 297 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 MAPKAPK5Q8IW41 473 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 FRAT1Q92837 279 aaPredicted RBP20.14■□□□□ 0.81
CLN3-255ENST00000637100 C12orf42Q96LP6 360 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 PIH1D3Q9NQM4 214 aaKnown RBP20.14■□□□□ 0.81
CLN3-255ENST00000637100 DBNLQ9UJU6 430 aaKnown RBP20.14■□□□□ 0.81
CLN3-255ENST00000637100 PALD1Q9ULE6 856 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 ZBTB21Q9ULJ3 1066 aa20.14■□□□□ 0.81
CLN3-255ENST00000637100 IRX3P78415 501 aaPredicted RBP20.13■□□□□ 0.81
CLN3-255ENST00000637100 SHROOM1Q2M3G4 852 aaPredicted RBP20.13■□□□□ 0.81
CLN3-255ENST00000637100 CERS3Q8IU89 383 aa20.13■□□□□ 0.81
CLN3-255ENST00000637100 TRMT44Q8IYL2 757 aaKnown RBP20.13■□□□□ 0.81
CLN3-255ENST00000637100 GPRC5AQ8NFJ5 357 aa20.13■□□□□ 0.81
CLN3-255ENST00000637100 GTF3C2Q8WUA4 911 aaPredicted RBP20.13■□□□□ 0.81
CLN3-255ENST00000637100 SOCS4Q8WXH5 440 aa20.13■□□□□ 0.81
CLN3-255ENST00000637100 NBPF3Q9H094 633 aa20.13■□□□□ 0.81
CLN3-255ENST00000637100 EMILIN3Q9NT22 766 aa20.13■□□□□ 0.81
CLN3-255ENST00000637100 TMOD4Q9NZQ9 345 aa20.13■□□□□ 0.81
CLN3-255ENST00000637100 MAPK4P31152 587 aa20.12■□□□□ 0.81
CLN3-255ENST00000637100 Q3C1V9 767 aa20.12■□□□□ 0.81
CLN3-255ENST00000637100 MORN1Q5T089 497 aa20.12■□□□□ 0.81
CLN3-255ENST00000637100 EHD4Q9H223 541 aa20.12■□□□□ 0.81
CLN3-255ENST00000637100 TAOK2Q9UL54 1235 aa20.12■□□□□ 0.81
CLN3-255ENST00000637100 MYO5AQ9Y4I1 1855 aaKnown RBP20.11■□□□□ 0.81
CLN3-255ENST00000637100 SOX1O00570 391 aaPredicted RBP20.11■□□□□ 0.81
CLN3-255ENST00000637100 SURF6O75683 361 aaKnown RBP20.11■□□□□ 0.81
CLN3-255ENST00000637100 GPR153Q6NV75 609 aa20.11■□□□□ 0.81
CLN3-255ENST00000637100 EAF2Q96CJ1 260 aaPredicted RBP20.11■□□□□ 0.81
CLN3-255ENST00000637100 NUDT12Q9BQG2 462 aa20.11■□□□□ 0.81
CLN3-255ENST00000637100 STAP2Q9UGK3 403 aa20.11■□□□□ 0.81
CLN3-255ENST00000637100 COL6A1P12109 1028 aa20.1■□□□□ 0.81
CLN3-255ENST00000637100 ERVK-9P63128 1117 aa20.1■□□□□ 0.81
CLN3-255ENST00000637100 ERVK-24P63145 666 aa20.1■□□□□ 0.81
CLN3-255ENST00000637100 DYNLL1P63167 89 aaKnown RBP20.1■□□□□ 0.81
CLN3-255ENST00000637100 USP17L2Q6R6M4 530 aa20.1■□□□□ 0.81
CLN3-255ENST00000637100 CRACR2BQ8N4Y2 399 aaPredicted RBP20.1■□□□□ 0.81
CLN3-255ENST00000637100 PEX10O60683 326 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 GDF11O95390 407 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 HLA-DOAP06340 250 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 LHX8Q68G74 356 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 LBX2Q6XYB7 198 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 PORCNQ9H237 461 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 TLR7Q9NYK1 1049 aaKnown RBP20.09■□□□□ 0.81
CLN3-255ENST00000637100 RABGAP1Q9Y3P9 1069 aa20.09■□□□□ 0.81
CLN3-255ENST00000637100 LAMA3Q16787 3333 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 IGHA2P01877 340 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 PRKAR2AP13861 404 aaKnown RBP20.08■□□□□ 0.81
CLN3-255ENST00000637100 CYP2B6P20813 491 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 CYP7A1P22680 504 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 CACNB2Q08289 660 aaPredicted RBP20.08■□□□□ 0.81
CLN3-255ENST00000637100 GPR142Q7Z601 462 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 KIAA1683Q9H0B3 1180 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 C11orf49Q9H6J7 331 aa20.08■□□□□ 0.81
CLN3-255ENST00000637100 COL6A3P12111 3177 aa20.07■□□□□ 0.8
CLN3-255ENST00000637100 PFASO15067 1338 aa20.07■□□□□ 0.8
CLN3-255ENST00000637100 CNMDO75829 334 aa20.07■□□□□ 0.8
CLN3-255ENST00000637100 DDX60LQ5H9U9 1706 aaKnown RBP20.07■□□□□ 0.8
CLN3-255ENST00000637100 GH2P01242 217 aa20.06■□□□□ 0.8
CLN3-255ENST00000637100 RLBP1P12271 317 aa20.06■□□□□ 0.8
CLN3-255ENST00000637100 RGS2P41220 211 aa20.06■□□□□ 0.8
CLN3-255ENST00000637100 OS9Q13438 667 aaPredicted RBP20.06■□□□□ 0.8
CLN3-255ENST00000637100 LRIT3Q3SXY7 679 aa20.06■□□□□ 0.8
CLN3-255ENST00000637100 PLEKHH3Q7Z736 793 aa20.06■□□□□ 0.8
CLN3-255ENST00000637100 CCDC8Q9H0W5 538 aaPredicted RBP20.06■□□□□ 0.8
CLN3-255ENST00000637100 SAP30BPQ9UHR5 308 aaKnown RBP20.06■□□□□ 0.8
CLN3-255ENST00000637100 SERPINB13Q9UIV8 391 aa20.06■□□□□ 0.8
CLN3-255ENST00000637100 USP17L15C9J2P7 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L13C9JLJ4 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L11C9JVI0 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L18D6R9N7 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L22D6RA61 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L17D6RBQ6 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L19D6RCP7 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L20D6RJB6 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 HOXC6P09630 235 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 GABPAQ06546 454 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 USP17L24Q0WX57 530 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 CATSPERGQ6ZRH7 1159 aa20.05■□□□□ 0.8
CLN3-255ENST00000637100 LRCH3Q96II8 777 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms