RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 HOXA7P31268 230 aaPredicted RBP29.1■■■□□ 2.25
CPSF1-214ENST00000622776 PRO3102Q9H379 93 aa29.1■■■□□ 2.25
CPSF1-214ENST00000622776 GINM1Q9NU53 330 aa29.1■■■□□ 2.25
CPSF1-214ENST00000622776 DBNLQ9UJU6 430 aaKnown RBP29.1■■■□□ 2.25
CPSF1-214ENST00000622776 C19orf81C9J6K1 198 aa29.09■■■□□ 2.25
CPSF1-214ENST00000622776 SHROOM1Q2M3G4 852 aaPredicted RBP29.09■■■□□ 2.25
CPSF1-214ENST00000622776 P2RX7Q99572 595 aaKnown RBP29.09■■■□□ 2.25
CPSF1-214ENST00000622776 MYO5AQ9Y4I1 1855 aaKnown RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 EVI5O60447 810 aa29.08■■■□□ 2.25
CPSF1-214ENST00000622776 GDF11O95390 407 aa29.08■■■□□ 2.25
CPSF1-214ENST00000622776 DYNLL1P63167 89 aaKnown RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 FTSJ3Q8IY81 847 aaKnown RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 PAWRQ96IZ0 340 aaKnown RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 CCDC8Q9H0W5 538 aaPredicted RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 TLR7Q9NYK1 1049 aaKnown RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 SAP30BPQ9UHR5 308 aaKnown RBP29.08■■■□□ 2.25
CPSF1-214ENST00000622776 CDK5RAP2Q96SN8 1893 aa29.08■■■□□ 2.25
CPSF1-214ENST00000622776 USP17L10C9JJH3 530 aa29.07■■■□□ 2.24
CPSF1-214ENST00000622776 CYP7A1P22680 504 aa29.07■■■□□ 2.24
CPSF1-214ENST00000622776 SZT2Q5T011 3432 aa29.07■■■□□ 2.24
CPSF1-214ENST00000622776 ZBTB21Q9ULJ3 1066 aa29.07■■■□□ 2.24
CPSF1-214ENST00000622776 HLA-DOAP06340 250 aa29.06■■■□□ 2.24
CPSF1-214ENST00000622776 ITPRIPQ8IWB1 547 aa29.06■■■□□ 2.24
CPSF1-214ENST00000622776 EAF2Q96CJ1 260 aaPredicted RBP29.06■■■□□ 2.24
CPSF1-214ENST00000622776 FOCADQ5VW36 1801 aa29.06■■■□□ 2.24
CPSF1-214ENST00000622776 RPTORQ8N122 1335 aa29.05■■■□□ 2.24
CPSF1-214ENST00000622776 RLBP1P12271 317 aa29.05■■■□□ 2.24
CPSF1-214ENST00000622776 HERVK_113P62684 666 aa29.05■■■□□ 2.24
CPSF1-214ENST00000622776 TRIM32Q13049 653 aa29.05■■■□□ 2.24
CPSF1-214ENST00000622776 NECAB2Q7Z6G3 386 aa29.05■■■□□ 2.24
CPSF1-214ENST00000622776 TXNRD2Q9NNW7 524 aa29.05■■■□□ 2.24
CPSF1-214ENST00000622776 HMX1Q9NP08 348 aaPredicted RBP29.05■■■□□ 2.24
CPSF1-214ENST00000622776 PEX10O60683 326 aa29.04■■■□□ 2.24
CPSF1-214ENST00000622776 IDH1O75874 414 aaKnown RBP29.04■■■□□ 2.24
CPSF1-214ENST00000622776 GPRC5AQ8NFJ5 357 aa29.04■■■□□ 2.24
CPSF1-214ENST00000622776 DIS3LQ8TF46 1054 aaKnown RBP29.04■■■□□ 2.24
CPSF1-214ENST00000622776 ANKLE1Q8NAG6 615 aa29.03■■■□□ 2.24
CPSF1-214ENST00000622776 TRIB2Q92519 343 aa29.03■■■□□ 2.24
CPSF1-214ENST00000622776 RBPJLQ9UBG7 517 aa29.03■■■□□ 2.24
CPSF1-214ENST00000622776 CYP2B6P20813 491 aa29.02■■■□□ 2.24
CPSF1-214ENST00000622776 MIGA1Q8NAN2 632 aa29.02■■■□□ 2.24
CPSF1-214ENST00000622776 EMILIN3Q9NT22 766 aa29.02■■■□□ 2.24
CPSF1-214ENST00000622776 CERS3Q8IU89 383 aa29.01■■■□□ 2.23
CPSF1-214ENST00000622776 MAGEB6Q8N7X4 407 aa29.01■■■□□ 2.23
CPSF1-214ENST00000622776 NUDT12Q9BQG2 462 aa29.01■■■□□ 2.23
CPSF1-214ENST00000622776 PLXNB2O15031 1838 aa29.01■■■□□ 2.23
CPSF1-214ENST00000622776 GH2P01242 217 aa29■■■□□ 2.23
CPSF1-214ENST00000622776 USP5P45974 858 aa29■■■□□ 2.23
CPSF1-214ENST00000622776 HNRNPUQ00839 825 aaKnown RBP eCLIP29■■■□□ 2.23
CPSF1-214ENST00000622776 USP17L2Q6R6M4 530 aa29■■■□□ 2.23
CPSF1-214ENST00000622776 SOCS4Q8WXH5 440 aa29■■■□□ 2.23
CPSF1-214ENST00000622776 NDUFB9Q9Y6M9 179 aa29■■■□□ 2.23
CPSF1-214ENST00000622776 XRCC5P13010 732 aaKnown RBP28.99■■■□□ 2.23
CPSF1-214ENST00000622776 MAPK4P31152 587 aa28.99■■■□□ 2.23
CPSF1-214ENST00000622776 Q3C1V9 767 aa28.99■■■□□ 2.23
CPSF1-214ENST00000622776 CEP85Q6P2H3 762 aa28.99■■■□□ 2.23
CPSF1-214ENST00000622776 GTF3C2Q8WUA4 911 aaPredicted RBP28.99■■■□□ 2.23
CPSF1-214ENST00000622776 ERVK-9P63128 1117 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 ERVK-24P63145 666 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 MAP3K21Q5TCX8 1036 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 TATDN1Q6P1N9 297 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 ANTXR1Q9H6X2 564 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 MYH1P12882 1939 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 ALPK3Q96L96 1907 aa28.98■■■□□ 2.23
CPSF1-214ENST00000622776 A0A1W2PPC1 479 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 PRKAR2AP13861 404 aaKnown RBP28.97■■■□□ 2.23
CPSF1-214ENST00000622776 MAP3K12Q12852 859 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 PDE3AQ14432 1141 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 POTEEQ6S8J3 1075 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 CCAR1Q8IX12 1150 aaKnown RBP28.97■■■□□ 2.23
CPSF1-214ENST00000622776 PAGR1Q9BTK6 254 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 NBPF3Q9H094 633 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 EHD4Q9H223 541 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 PORCNQ9H237 461 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 STAP2Q9UGK3 403 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 SERPINB13Q9UIV8 391 aa28.97■■■□□ 2.23
CPSF1-214ENST00000622776 MNX1P50219 401 aaPredicted RBP28.96■■■□□ 2.23
CPSF1-214ENST00000622776 TMED8Q6PL24 325 aaPredicted RBP28.96■■■□□ 2.23
CPSF1-214ENST00000622776 USP6NLQ92738 828 aa28.96■■■□□ 2.23
CPSF1-214ENST00000622776 OGDHLQ9ULD0 1010 aa28.96■■■□□ 2.23
CPSF1-214ENST00000622776 EXOC6BQ9Y2D4 811 aa28.96■■■□□ 2.23
CPSF1-214ENST00000622776 TTC6Q86TZ1 520 aa28.95■■■□□ 2.22
CPSF1-214ENST00000622776 AACSQ86V21 672 aa28.95■■■□□ 2.22
CPSF1-214ENST00000622776 ERC1Q8IUD2 1116 aa28.95■■■□□ 2.22
CPSF1-214ENST00000622776 TRMT44Q8IYL2 757 aaKnown RBP28.95■■■□□ 2.22
CPSF1-214ENST00000622776 C12orf42Q96LP6 360 aa28.95■■■□□ 2.22
CPSF1-214ENST00000622776 FEZ1Q99689 392 aa28.95■■■□□ 2.22
CPSF1-214ENST00000622776 ZYXQ15942 572 aaKnown RBP28.94■■■□□ 2.22
CPSF1-214ENST00000622776 GPR142Q7Z601 462 aa28.94■■■□□ 2.22
CPSF1-214ENST00000622776 PLEKHH3Q7Z736 793 aa28.94■■■□□ 2.22
CPSF1-214ENST00000622776 C7orf61Q8IZ16 206 aa28.94■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L15C9J2P7 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L13C9JLJ4 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L11C9JVI0 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L18D6R9N7 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L22D6RA61 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L17D6RBQ6 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L19D6RCP7 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 USP17L20D6RJB6 530 aa28.93■■■□□ 2.22
CPSF1-214ENST00000622776 ZKSCAN1P17029 563 aaPredicted RBP28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms