RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 ECM2O94769 699 aaPredicted RBP13.57□□□□□ -0.24
SLIRP-212ENST00000613856 APPP05067 770 aa13.57□□□□□ -0.24
SLIRP-212ENST00000613856 TDO2P48775 406 aa13.57□□□□□ -0.24
SLIRP-212ENST00000613856 SP3Q02447 781 aa13.57□□□□□ -0.24
SLIRP-212ENST00000613856 SH3RF3Q8TEJ3 882 aaPredicted RBP13.57□□□□□ -0.24
SLIRP-212ENST00000613856 DDRGK1Q96HY6 314 aa13.57□□□□□ -0.24
SLIRP-212ENST00000613856 PRMT6Q96LA8 375 aaPredicted RBP13.57□□□□□ -0.24
SLIRP-212ENST00000613856 APOBEC3HQ6NTF7 200 aaKnown RBP13.56□□□□□ -0.24
SLIRP-212ENST00000613856 SH3TC2Q8TF17 1288 aa13.56□□□□□ -0.24
SLIRP-212ENST00000613856 SDR42E1Q8WUS8 393 aa13.56□□□□□ -0.24
SLIRP-212ENST00000613856 ARHGAP39Q9C0H5 1083 aa13.56□□□□□ -0.24
SLIRP-212ENST00000613856 ELP3Q9H9T3 547 aa13.56□□□□□ -0.24
SLIRP-212ENST00000613856 VEZTQ9HBM0 779 aa13.56□□□□□ -0.24
SLIRP-212ENST00000613856 DCP1AQ9NPI6 582 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-212ENST00000613856 ARPP21Q9UBL0 812 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-212ENST00000613856 ZNF213O14771 459 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 PSMA5P28066 241 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 INHBEP58166 350 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 DLGAP5Q15398 846 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 CFAP100Q494V2 611 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 SBK1Q52WX2 424 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 TEX11Q8IYF3 940 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 MTMR14Q8NCE2 650 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 BRI3BPQ8WY22 251 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 SNX21Q969T3 373 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 OPTNQ96CV9 577 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 MS4A4AQ96JQ5 239 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 ZSWIM6Q9HCJ5 1215 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 ANAPC4Q9UJX5 808 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 TAF6LQ9Y6J9 622 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 ROBO3Q96MS0 1386 aa13.55□□□□□ -0.24
SLIRP-212ENST00000613856 COL2A1P02458 1487 aaPredicted RBP13.55□□□□□ -0.24
SLIRP-212ENST00000613856 TESPA1A2RU30 521 aaPredicted RBP13.54□□□□□ -0.24
SLIRP-212ENST00000613856 NPM3O75607 178 aaKnown RBP13.54□□□□□ -0.24
SLIRP-212ENST00000613856 USP5P45974 858 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 ADCK5Q3MIX3 580 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 CHRDL2Q6WN34 429 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 STOX1Q6ZVD7 989 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 FAM43AQ8N2R8 423 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 SHISA4Q96DD7 197 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 JAKMIP1Q96N16 626 aaKnown RBP13.54□□□□□ -0.24
SLIRP-212ENST00000613856 NBPF3Q9H094 633 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 FLT1P17948 1338 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 MYH8P13535 1937 aa13.54□□□□□ -0.24
SLIRP-212ENST00000613856 SPDYE2BA6NHP3 402 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 E7EWF7 191 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 PPP1R12BO60237 982 aaPredicted RBP13.53□□□□□ -0.24
SLIRP-212ENST00000613856 ST18O60284 1047 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 WDHD1O75717 1129 aaPredicted RBP13.53□□□□□ -0.24
SLIRP-212ENST00000613856 HMGB1P09429 215 aaKnown RBP13.53□□□□□ -0.24
SLIRP-212ENST00000613856 SPDYE6P0CI01 402 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 PCP11498 1178 aaKnown RBP13.53□□□□□ -0.24
SLIRP-212ENST00000613856 CASTP20810 708 aaKnown RBP13.53□□□□□ -0.24
SLIRP-212ENST00000613856 HAND2P61296 217 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 PPARAQ07869 468 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 RASA3Q14644 834 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 SLC9C1Q4G0N8 1177 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 CDC42EP5Q6NZY7 148 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 TBC1D10CQ8IV04 446 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 STAG1Q8WVM7 1258 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 TMEM106CQ9BVX2 250 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 RBM27Q9P2N5 1060 aaKnown RBP13.53□□□□□ -0.24
SLIRP-212ENST00000613856 SIPA1L1O43166 1804 aa13.53□□□□□ -0.24
SLIRP-212ENST00000613856 NT5C2P49902 561 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 BECN1Q14457 450 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 SLC4A8Q2Y0W8 1093 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 CTR9Q6PD62 1173 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 BLOC1S2Q6QNY1 142 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.52□□□□□ -0.25
SLIRP-212ENST00000613856 RUFY3Q7L099 469 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 TGFBRAP1Q8WUH2 860 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 TTC14Q96N46 770 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 NEK1Q96PY6 1258 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 IDI2Q9BXS1 227 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 RNF41Q9H4P4 317 aaPredicted RBP13.52□□□□□ -0.25
SLIRP-212ENST00000613856 USP40Q9NVE5 1235 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 CYP46A1Q9Y6A2 500 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 WDR19Q8NEZ3 1342 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 LAMA3Q16787 3333 aa13.52□□□□□ -0.25
SLIRP-212ENST00000613856 USP17L12C9JPN9 530 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 USP17L21D6R901 530 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 RPS6KB1P23443 525 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 CTGFP29279 349 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 MCM2P49736 904 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 NEK4P51957 841 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 RBM5P52756 815 aaKnown RBP eCLIP13.51□□□□□ -0.25
SLIRP-212ENST00000613856 MTFR1Q15390 333 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 TAF1CQ15572 869 aaPredicted RBP13.51□□□□□ -0.25
SLIRP-212ENST00000613856 AKNAD1Q5T1N1 836 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 MAPKAPK5Q8IW41 473 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 AMOTL1Q8IY63 956 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 ANKRD13AQ8IZ07 590 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 NCOA7Q8NI08 942 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 TEPSINQ96N21 525 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 UPF3BQ9BZI7 483 aaKnown RBP13.51□□□□□ -0.25
SLIRP-212ENST00000613856 ALDH8A1Q9H2A2 487 aaPredicted RBP13.51□□□□□ -0.25
SLIRP-212ENST00000613856 CNNM2Q9H8M5 875 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 MCM9Q9NXL9 1143 aa13.51□□□□□ -0.25
SLIRP-212ENST00000613856 CCL15-CCL14A0A0B4J2E2 113 aa13.5□□□□□ -0.25
SLIRP-212ENST00000613856 FGRP09769 529 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms