RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NCAPHQ15003 741 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 RESP18Q5W5W9 173 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 PIK3AP1Q6ZUJ8 805 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 FCHSD1Q86WN1 690 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 PSMB7Q99436 277 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 PLEKHA4Q9H4M7 779 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 CDC23Q9UJX2 597 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 ADAM21Q9UKJ8 722 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 FAN1Q9Y2M0 1017 aa14.25□□□□□ -0.13
LIG1-221ENST00000613670 H2AFXP16104 143 aaPredicted RBP14.24□□□□□ -0.13
LIG1-221ENST00000613670 MCAMP43121 646 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 SETQ01105 290 aaPredicted RBP14.24□□□□□ -0.13
LIG1-221ENST00000613670 BRD3Q15059 726 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 ZNF654Q8IZM8 581 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 CDK5RAP3Q96JB5 506 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 PIH1D3Q9NQM4 214 aaKnown RBP14.24□□□□□ -0.13
LIG1-221ENST00000613670 PARP3Q9Y6F1 533 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 PLCD1P51178 756 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 FMR1Q06787 632 aaKnown RBP eCLIP14.24□□□□□ -0.137e-8■■□□□ 12.6
LIG1-221ENST00000613670 CCDC96Q2M329 555 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 TTF2Q9UNY4 1162 aaKnown RBP14.24□□□□□ -0.13
LIG1-221ENST00000613670 HPS5Q9UPZ3 1129 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 CCDC178Q5BJE1 867 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 SDR42E1Q8WUS8 393 aa14.24□□□□□ -0.13
LIG1-221ENST00000613670 TSPY2A6NKD2 308 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 CDC25AP30304 524 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 CYP2C19P33261 490 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 ADD2P35612 726 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 GRIN1Q05586 938 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 USP49Q70CQ1 688 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 AMOTL1Q8IY63 956 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 ENOX1Q8TC92 643 aaKnown RBP14.23□□□□□ -0.13
LIG1-221ENST00000613670 ZHX3Q9H4I2 956 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 ANKARQ7Z5J8 1434 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 GUCY1A2P33402 732 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 SPATA1Q5VX52 437 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 DHX37Q8IY37 1157 aaKnown RBP14.23□□□□□ -0.13
LIG1-221ENST00000613670 FANCBQ8NB91 859 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 RAD51AP2Q09MP3 1159 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 TMTC1Q8IUR5 882 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 SPATA5Q8NB90 893 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 SYMPKQ92797 1274 aaKnown RBP14.23□□□□□ -0.13
LIG1-221ENST00000613670 JAG2Q9Y219 1238 aa14.23□□□□□ -0.13
LIG1-221ENST00000613670 CCDC151A5D8V7 595 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 PATL2C9JE40 543 aaKnown RBP14.22□□□□□ -0.13
LIG1-221ENST00000613670 IDEP14735 1019 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 TDRD12Q587J7 1177 aaKnown RBP14.22□□□□□ -0.13
LIG1-221ENST00000613670 CYP26C1Q6V0L0 522 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 REXO1L1PQ8IX06 675 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 ABCB6Q9NP58 842 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 AKR1B10O60218 316 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 CIAO1O76071 339 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 TTC38Q5R3I4 469 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 IQCEQ6IPM2 695 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 OXER1Q8TDS5 423 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 FAM107BQ9H098 131 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 NEDD4P46934 1319 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 ADGRL3Q9HAR2 1447 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 MICALL1Q8N3F8 863 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 MRPL44Q9H9J2 332 aaKnown RBP14.22□□□□□ -0.13
LIG1-221ENST00000613670 MYO1BO43795 1136 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 KIAA0754O94854 1291 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 MMP1P03956 469 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 PAK1Q13153 545 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 NCAPH2Q6IBW4 605 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 VAT1LQ9HCJ6 419 aa14.22□□□□□ -0.13
LIG1-221ENST00000613670 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.22□□□□□ -0.13
LIG1-221ENST00000613670 KRT86O43790 486 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 CYLC1P35663 651 aaPredicted RBP14.21□□□□□ -0.13
LIG1-221ENST00000613670 EPS15P42566 896 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 NELFBQ8WX92 580 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 UBN2Q6ZU65 1347 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 MAGEB6P1A0A0J9YX57 407 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 SHTN1A0MZ66 631 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 PSMA7O14818 248 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 MCM3P25205 808 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 PUM3Q15397 648 aaKnown RBP14.21□□□□□ -0.13
LIG1-221ENST00000613670 CACNA2D4Q7Z3S7 1137 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 SUGCTQ9HAC7 445 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 TUBE1Q9UJT0 475 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 PALLDQ8WX93 1383 aa14.21□□□□□ -0.13
LIG1-221ENST00000613670 USO1O60763 962 aaKnown RBP14.21□□□□□ -0.14
LIG1-221ENST00000613670 MYO6Q9UM54 1294 aa14.21□□□□□ -0.14
LIG1-221ENST00000613670 MRFAP1Q9Y605 127 aa14.21□□□□□ -0.14
LIG1-221ENST00000613670 ATP8B1O43520 1251 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 BMP15O95972 392 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 IL2RBP14784 551 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 PAFAH1B1P43034 410 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 KIF5AQ12840 1032 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 DZIP3Q86Y13 1208 aaKnown RBP14.2□□□□□ -0.14
LIG1-221ENST00000613670 TC2NQ8N9U0 490 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 RMND1Q9NWS8 449 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 RFX7Q2KHR2 1363 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 FMNL1O95466 1100 aaPredicted RBP14.2□□□□□ -0.14
LIG1-221ENST00000613670 BCAMP50895 628 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 PTGDRQ13258 359 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 CAVIN4Q5BKX8 364 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 CERS3Q8IU89 383 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 AFAP1L1Q8TED9 768 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 CCDC42Q96M95 316 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms