RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 Q7L0L9 218 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 ADGRA1Q86SQ6 560 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 FOXP4Q8IVH2 680 aaPredicted RBP7.55□□□□□ -1.2
VRK3-220ENST00000600259 TEX11Q8IYF3 940 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 C7orf61Q8IZ16 206 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 NEUROD6Q96NK8 337 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 PORCNQ9H237 461 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 EMILIN3Q9NT22 766 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 TNNQ9UQP3 1299 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 DOCK1Q14185 1865 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 C19orf81C9J6K1 198 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 CNMDO75829 334 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 CYP2E1P05181 493 aaPredicted RBP7.54□□□□□ -1.2
VRK3-220ENST00000600259 ASNSP08243 561 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 GNAI3P08754 354 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 PRKAR2AP13861 404 aaKnown RBP7.54□□□□□ -1.2
VRK3-220ENST00000600259 HERVK_113P62684 666 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 MTMR2Q13614 643 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 CCL14Q16627 93 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 DEFB123Q8N688 67 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 GPRC5AQ8NFJ5 357 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 DHX36Q9H2U1 1008 aaKnown RBP7.54□□□□□ -1.2
VRK3-220ENST00000600259 C11orf49Q9H6J7 331 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 AS3MTQ9HBK9 375 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 RAI14Q9P0K7 980 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 STXBP5LQ9Y2K9 1186 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 PLXNB2O15031 1838 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 DOCK2Q92608 1830 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 MYH13Q9UKX3 1938 aa7.54□□□□□ -1.2
VRK3-220ENST00000600259 USP17L10C9JJH3 530 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 POTEB2H3BUK9 544 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 UQCRFS1P1P0C7P4 283 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 CCND3P30281 292 aaPredicted RBP7.53□□□□□ -1.2
VRK3-220ENST00000600259 ERVK-9P63128 1117 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 ERVK-24P63145 666 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 POLA2Q14181 598 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 LRRC26Q2I0M4 334 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 MAPKAPK5Q8IW41 473 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 TDHQ8IZJ6 230 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 TGFBRAP1Q8WUH2 860 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 ZNF512BQ96KM6 892 aaPredicted RBP7.53□□□□□ -1.2
VRK3-220ENST00000600259 NUDT12Q9BQG2 462 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 DBNDD2Q9BQY9 259 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 GPR108Q9NPR9 543 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 SNRKQ9NRH2 765 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 GINM1Q9NU53 330 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 AATFQ9NY61 560 aaKnown RBP eCLIP7.53□□□□□ -1.2
VRK3-220ENST00000600259 LRP2BPQ9P2M1 347 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 PALD1Q9ULE6 856 aa7.53□□□□□ -1.2
VRK3-220ENST00000600259 FLT1P17948 1338 aa7.52□□□□□ -1.2
VRK3-220ENST00000600259 LOC285556D6RIA3 1793 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 IGSF3O75054 1194 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 BAG3O95817 575 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 GNAI2P04899 355 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 ATXN8OSP0DMR3 200 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 TRIM27P14373 513 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 MAPK4P31152 587 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 DYNLL1P63167 89 aaKnown RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 IRX3P78415 501 aaPredicted RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 CACNB1Q02641 598 aaPredicted RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 G3BP1Q13283 466 aaKnown RBP eCLIP7.52□□□□□ -1.21
VRK3-220ENST00000600259 GORABQ5T7V8 394 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 NAA16Q6N069 864 aaPredicted RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 TATDN1Q6P1N9 297 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 GPR142Q7Z601 462 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 PLEKHH3Q7Z736 793 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 TRMT44Q8IYL2 757 aaKnown RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 SSH3Q8TE77 659 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 SOCS4Q8WXH5 440 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 C12orf42Q96LP6 360 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 PIH1D3Q9NQM4 214 aaKnown RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 TMOD4Q9NZQ9 345 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 FLRT1Q9NZU1 646 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 ZBTB21Q9ULJ3 1066 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 RABGAP1Q9Y3P9 1069 aa7.52□□□□□ -1.21
VRK3-220ENST00000600259 LAMA2P24043 3122 aaKnown RBP7.52□□□□□ -1.21
VRK3-220ENST00000600259 DNAH12Q6ZR08 3092 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 SIPA1L1O43166 1804 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 BCAR3O75815 825 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 GDF11O95390 407 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 HOXC6P09630 235 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 PLCG2P16885 1265 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 PTPREP23469 700 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 GUCY1A2P33402 732 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 ZAP70P43403 619 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 ATP8B2P98198 1209 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 MAP2K5Q13163 448 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 TNNI3KQ59H18 835 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 FAM109BQ6ICB4 259 aaPredicted RBP7.51□□□□□ -1.21
VRK3-220ENST00000600259 USP17L2Q6R6M4 530 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 LBX2Q6XYB7 198 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 CATSPERGQ6ZRH7 1159 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 TRPV1Q8NER1 839 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 EDC3Q96F86 508 aaKnown RBP7.51□□□□□ -1.21
VRK3-220ENST00000600259 UBE2OQ9C0C9 1292 aaKnown RBP7.51□□□□□ -1.21
VRK3-220ENST00000600259 BTBD7Q9P203 1132 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 SAP30BPQ9UHR5 308 aaKnown RBP7.51□□□□□ -1.21
VRK3-220ENST00000600259 NOP58Q9Y2X3 529 aaKnown RBP7.51□□□□□ -1.21
VRK3-220ENST00000600259 FPGT-TNNI3KV9GXZ4 949 aa7.51□□□□□ -1.21
VRK3-220ENST00000600259 USP17L15C9J2P7 530 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms