RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 EAF2Q96CJ1 260 aaPredicted RBP14.4□□□□□ -0.1
CLIP3-204ENST00000590559 AS3MTQ9HBK9 375 aa14.4□□□□□ -0.1
CLIP3-204ENST00000590559 GINM1Q9NU53 330 aa14.4□□□□□ -0.1
CLIP3-204ENST00000590559 TLR7Q9NYK1 1049 aaKnown RBP14.4□□□□□ -0.1
CLIP3-204ENST00000590559 SURF6O75683 361 aaKnown RBP14.39□□□□□ -0.11
CLIP3-204ENST00000590559 MNX1P50219 401 aaPredicted RBP14.39□□□□□ -0.11
CLIP3-204ENST00000590559 MAPKAPK5Q8IW41 473 aa14.39□□□□□ -0.11
CLIP3-204ENST00000590559 DEFB118Q96PH6 123 aa14.39□□□□□ -0.11
CLIP3-204ENST00000590559 C1orf115Q9H7X2 142 aa14.39□□□□□ -0.11
CLIP3-204ENST00000590559 PALD1Q9ULE6 856 aa14.39□□□□□ -0.11
CLIP3-204ENST00000590559 A0A0C4DFX4 3053 aa14.38□□□□□ -0.11
CLIP3-204ENST00000590559 C19orf81C9J6K1 198 aa14.38□□□□□ -0.11
CLIP3-204ENST00000590559 DYNLL1P63167 89 aaKnown RBP14.38□□□□□ -0.11
CLIP3-204ENST00000590559 MTMR2Q13614 643 aa14.38□□□□□ -0.11
CLIP3-204ENST00000590559 P2RX7Q99572 595 aaKnown RBP14.38□□□□□ -0.11
CLIP3-204ENST00000590559 NOL10Q9BSC4 688 aaKnown RBP14.38□□□□□ -0.11
CLIP3-204ENST00000590559 TXNRD2Q9NNW7 524 aa14.38□□□□□ -0.11
CLIP3-204ENST00000590559 FRMPD3Q5JV73 1810 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 HMGCRP04035 888 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 TRIM32Q13049 653 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 MAP3K21Q5TCX8 1036 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 TATDN1Q6P1N9 297 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 USP6NLQ92738 828 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.37□□□□□ -0.11
CLIP3-204ENST00000590559 CCDC8Q9H0W5 538 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-204ENST00000590559 RBPJLQ9UBG7 517 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 ZBTB21Q9ULJ3 1066 aa14.37□□□□□ -0.11
CLIP3-204ENST00000590559 NAV1Q8NEY1 1877 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 USP17L10C9JJH3 530 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 PEX10O60683 326 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 GDF11O95390 407 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 TFRCP02786 760 aaKnown RBP14.36□□□□□ -0.11
CLIP3-204ENST00000590559 HERVK_113P62684 666 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 OS9Q13438 667 aaPredicted RBP14.36□□□□□ -0.11
CLIP3-204ENST00000590559 CEP85Q6P2H3 762 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 TMED8Q6PL24 325 aaPredicted RBP14.36□□□□□ -0.11
CLIP3-204ENST00000590559 ANKLE1Q8NAG6 615 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 TRIB2Q92519 343 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 PAWRQ96IZ0 340 aaKnown RBP14.36□□□□□ -0.11
CLIP3-204ENST00000590559 EMILIN3Q9NT22 766 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 NR2E3Q9Y5X4 410 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 RPTORQ8N122 1335 aa14.36□□□□□ -0.11
CLIP3-204ENST00000590559 RLFQ13129 1914 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 XRCC5P13010 732 aaKnown RBP14.35□□□□□ -0.11
CLIP3-204ENST00000590559 CYP7A1P22680 504 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 Q3C1V9 767 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 CERS3Q8IU89 383 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 DIS3LQ8TF46 1054 aaKnown RBP14.35□□□□□ -0.11
CLIP3-204ENST00000590559 C12orf42Q96LP6 360 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 EHD4Q9H223 541 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 ANTXR1Q9H6X2 564 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 TMOD4Q9NZQ9 345 aa14.35□□□□□ -0.11
CLIP3-204ENST00000590559 SAP30BPQ9UHR5 308 aaKnown RBP14.35□□□□□ -0.11
CLIP3-204ENST00000590559 A0A1W2PPC1 479 aa14.34□□□□□ -0.11
CLIP3-204ENST00000590559 IRX3P78415 501 aaPredicted RBP14.34□□□□□ -0.11
CLIP3-204ENST00000590559 CRACR2BQ8N4Y2 399 aaPredicted RBP14.34□□□□□ -0.11
CLIP3-204ENST00000590559 GPRC5AQ8NFJ5 357 aa14.34□□□□□ -0.11
CLIP3-204ENST00000590559 RIOK1Q9BRS2 568 aaKnown RBP14.34□□□□□ -0.11
CLIP3-204ENST00000590559 TAOK2Q9UL54 1235 aa14.34□□□□□ -0.11
CLIP3-204ENST00000590559 OGDHLQ9ULD0 1010 aa14.34□□□□□ -0.11
CLIP3-204ENST00000590559 NDUFB9Q9Y6M9 179 aa14.34□□□□□ -0.11
CLIP3-204ENST00000590559 EVI5O60447 810 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 CNMDO75829 334 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 HLA-DOAP06340 250 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 ERVK-9P63128 1117 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 ERVK-24P63145 666 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 MORN1Q5T089 497 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 NECAB2Q7Z6G3 386 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 ITPRIPQ8IWB1 547 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 FTSJ3Q8IY81 847 aaKnown RBP14.33□□□□□ -0.12
CLIP3-204ENST00000590559 MAGEB6Q8N7X4 407 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 PORCNQ9H237 461 aa14.33□□□□□ -0.12
CLIP3-204ENST00000590559 HMX1Q9NP08 348 aaPredicted RBP14.33□□□□□ -0.12
CLIP3-204ENST00000590559 A0A0G2JMZ2 1700 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 PARP14Q460N5 1801 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 IDH1O75874 414 aaKnown RBP14.32□□□□□ -0.12
CLIP3-204ENST00000590559 GH2P01242 217 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 MAPK4P31152 587 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L2Q6R6M4 530 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 LBX2Q6XYB7 198 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 MIGA1Q8NAN2 632 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 GTF3C2Q8WUA4 911 aaPredicted RBP14.32□□□□□ -0.12
CLIP3-204ENST00000590559 SOCS4Q8WXH5 440 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 GDF15Q99988 308 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 NUDT12Q9BQG2 462 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 SERPINB13Q9UIV8 391 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 MYH8P13535 1937 aa14.32□□□□□ -0.12
CLIP3-204ENST00000590559 CYP2B6P20813 491 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 GUCY1A2P33402 732 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 BMP8BP34820 402 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 SHMT1P34896 483 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 HNRNPUQ00839 825 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLIP3-204ENST00000590559 GABPAQ06546 454 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 GPR142Q7Z601 462 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 KIAA1683Q9H0B3 1180 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 EXOC6BQ9Y2D4 811 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 UNC80Q8N2C7 3258 aa14.31□□□□□ -0.12
CLIP3-204ENST00000590559 ZNF236Q9UL36 1845 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 IGHA2P01877 340 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 COL6A1P12109 1028 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms