RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	OXER1	Q8TDS5	423 aa		10.88	□□□□□ -0.67
PPP4R1-222	ENST00000582594	IGDCC4	Q8TDY8	1250 aa		10.88	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SLC12A7	Q9Y666	1083 aa		10.88	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ACTN4	O43707	911 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CIAO1	O76071	339 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PTPRE	P23469	700 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SAFB	Q15424	915 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	APTX	Q7Z2E3	356 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	KRT28	Q7Z3Y7	464 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	RAB21	Q9UL25	225 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	AKAP2	Q9Y2D5	859 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	XIRP1	Q702N8	1843 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SYNRG	Q9UMZ2	1314 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ADAMTS7	Q9UKP4	1686 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CTAGE15	A4D2H0	777 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	FAM205C	A6NFA0	338 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	LRRIQ3	A6PVS8	624 aa	Predicted RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	MFAP3L	O75121	409 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CTAGE8	P0CG41	777 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CHRNA2	Q15822	529 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	HSP90B2P	Q58FF3	399 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CTAGE6	Q86UF2	777 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CTAGE4	Q8IX94	777 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SYNE4	Q8N205	404 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	HNRNPLL	Q8WVV9	542 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	FAM89A	Q96GI7	184 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	DCAF5	Q96JK2	942 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	GDAP1L1	Q96MZ0	367 aa		10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PIH1D3	Q9NQM4	214 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594	DDX60	Q8IY21	1712 aa	Known RBP	10.87	□□□□□ -0.67
PPP4R1-222	ENST00000582594		A0A087X0B3	334 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	MMP1	P03956	469 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ADD2	P35612	726 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	USP5	P45974	858 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	AKAP17A	Q02040	695 aa	Known RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	NT5DC1	Q5TFE4	455 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	EPSTI1	Q96J88	318 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CABP5	Q9NP86	173 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	WDR19	Q8NEZ3	1342 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ZNF532	Q9HCE3	1301 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SLIT3	O75094	1523 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	POTEB2	H3BUK9	544 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	RNF225	M0QZC1	329 aa	Predicted RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	GYPC	P04921	128 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ERVK-24	P63145	666 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	METTL24	Q5JXM2	366 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	RASGRP2	Q7LDG7	609 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	NAPG	Q99747	312 aa	Predicted RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SLF1	Q9BQI6	1058 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ZSWIM5	Q9P217	1185 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TRIM10	Q9UDY6	481 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	WWC3	Q9ULE0	1092 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TACC3	Q9Y6A5	838 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SPEF2	Q9C093	1822 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	FMNL1	O95466	1100 aa	Predicted RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	IVL	P07476	585 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SPATA1	Q5VX52	437 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	IQUB	Q8NA54	791 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CABLES1	Q8TDN4	633 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	NUP133	Q8WUM0	1156 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	DDX17	Q92841	729 aa	Known RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	VPS16	Q9H269	839 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	FAM204A	Q9H8W3	233 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ADD3	Q9UEY8	706 aa	Known RBP	10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TFR2	Q9UP52	801 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CTNND2	Q9UQB3	1225 aa		10.86	□□□□□ -0.67
PPP4R1-222	ENST00000582594	hCG_1642624	A0A1W2PR95	340 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	NOP2	P46087	812 aa	Known RBP	10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	LRRC31	Q6UY01	552 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TICAM2	Q86XR7	235 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TJP1	Q07157	1748 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ENC1	O14682	589 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	DPYD	Q12882	1025 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	FILIP1L	Q4L180	1135 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TMEM87B	Q96K49	555 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	NUP88	Q99567	741 aa	Predicted RBP	10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	HINFP	Q9BQA5	517 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	NAA15	Q9BXJ9	866 aa	Known RBP	10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	HDAC6	Q9UBN7	1215 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	GUCA1B	Q9UMX6	200 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	MYH7	P12883	1935 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PLEKHG2	Q9H7P9	1386 aa		10.85	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ZMYND10	O75800	440 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	ERCC5	P28715	1186 aa	Predicted RBP	10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TRIML1	Q8N9V2	468 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	RIN2	Q8WYP3	895 aa	Predicted RBP	10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	AIDA	Q96BJ3	306 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	BLZF1	Q9H2G9	400 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	SRPRB	Q9Y5M8	271 aa	Known RBP	10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	EIF3CL	B5ME19	914 aa	Known RBP	10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PBX1	P40424	430 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	RTN1	Q16799	776 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	RILPL1	Q5EBL4	403 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	PACS2	Q86VP3	889 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	GSPT2	Q8IYD1	628 aa	Known RBP	10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	FAM71B	Q8TC56	605 aa		10.84	□□□□□ -0.67

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