RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 GTF2IRD1Q9UHL9 959 aa6.33□□□□□ -1.4
VPS13C-207ENST00000558919 EOMESO95936 686 aa6.32□□□□□ -1.4
VPS13C-207ENST00000558919 WNT11O96014 354 aa6.32□□□□□ -1.4
VPS13C-207ENST00000558919 TMEM201Q5SNT2 666 aa6.32□□□□□ -1.4
VPS13C-207ENST00000558919 MCATQ8IVS2 390 aaKnown RBP6.32□□□□□ -1.4
VPS13C-207ENST00000558919 NETO1Q8TDF5 533 aa6.32□□□□□ -1.4
VPS13C-207ENST00000558919 ZNF296Q8WUU4 475 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-207ENST00000558919 MRRFQ96E11 262 aaKnown RBP6.32□□□□□ -1.4
VPS13C-207ENST00000558919 TMEM87BQ96K49 555 aa6.32□□□□□ -1.4
VPS13C-207ENST00000558919 HEXIM2Q96MH2 286 aaKnown RBP6.32□□□□□ -1.4
VPS13C-207ENST00000558919 SCAMP3O14828 347 aaKnown RBP6.31□□□□□ -1.4
VPS13C-207ENST00000558919 SLITRK5O94991 958 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 PLCG1P19174 1290 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 OXCT1P55809 520 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 PRAMEF13Q5VWM6 474 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 ARHGAP27Q6ZUM4 889 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 REC114Q7Z4M0 266 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 VSIG10LQ86VR7 867 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 RNF34Q969K3 372 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 ACSF2Q96CM8 615 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-207ENST00000558919 CCDC39Q9UFE4 941 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 ADAMTS1Q9UHI8 967 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 MAPK8IP1Q9UQF2 711 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 CORINQ9Y5Q5 1042 aa6.31□□□□□ -1.4
VPS13C-207ENST00000558919 CEACAM5P06731 702 aa6.3□□□□□ -1.4
VPS13C-207ENST00000558919 CWF19L2Q2TBE0 894 aaKnown RBP6.3□□□□□ -1.4
VPS13C-207ENST00000558919 ZNF746Q6NUN9 644 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-207ENST00000558919 LETMD1Q6P1Q0 360 aa6.3□□□□□ -1.4
VPS13C-207ENST00000558919 FBXO27Q8NI29 283 aa6.3□□□□□ -1.4
VPS13C-207ENST00000558919 MISP3Q96FF7 219 aa6.3□□□□□ -1.4
VPS13C-207ENST00000558919 MIPEPQ99797 713 aa6.3□□□□□ -1.4
VPS13C-207ENST00000558919 PRDM5Q9NQX1 630 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-207ENST00000558919 POLR3KQ9Y2Y1 108 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-207ENST00000558919 UNCXA6NJT0 531 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 ADAMTS4O75173 837 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 IFI16Q16666 785 aaKnown RBP6.29□□□□□ -1.4
VPS13C-207ENST00000558919 C22orf34Q6ZV56 151 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 USP48Q86UV5 1035 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 STK11IPQ8N1F8 1099 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 PLD6Q8N2A8 252 aaKnown RBP6.29□□□□□ -1.4
VPS13C-207ENST00000558919 FAM181AQ8N9Y4 354 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 COX4I2Q96KJ9 171 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 NT5C1AQ9BXI3 368 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 KIAA1522Q9P206 1035 aaPredicted RBP6.29□□□□□ -1.4
VPS13C-207ENST00000558919 ANGEL1Q9UNK9 670 aaKnown RBP6.29□□□□□ -1.4
VPS13C-207ENST00000558919 U3KQE9 123 aa6.29□□□□□ -1.4
VPS13C-207ENST00000558919 TMEM265A0A087WTH1 108 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 TLR3O15455 904 aaKnown RBP6.28□□□□□ -1.4
VPS13C-207ENST00000558919 GRIN3BO60391 1043 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 HTR3BO95264 441 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 YARSP54577 528 aaKnown RBP6.28□□□□□ -1.4
VPS13C-207ENST00000558919 GP2P55259 537 aaKnown RBP6.28□□□□□ -1.4
VPS13C-207ENST00000558919 KIAA0825Q8IV33 1275 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 RIN3Q8TB24 985 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 XAGE3Q8WTP9 111 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 FBXL18Q96ME1 805 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 TNKS2Q9H2K2 1166 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 REV1Q9UBZ9 1251 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 VAV3Q9UKW4 847 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 TPX2Q9ULW0 747 aaKnown RBP6.28□□□□□ -1.4
VPS13C-207ENST00000558919 PLAGL2Q9UPG8 496 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 SNX11Q9Y5W9 270 aa6.28□□□□□ -1.4
VPS13C-207ENST00000558919 GNAT3A8MTJ3 354 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 ATE1O95260 518 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 ZNF865P0CJ78 1059 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-207ENST00000558919 CYP7A1P22680 504 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 CRKP46108 304 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 PRKCQQ04759 706 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 MLECQ14165 292 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 SFRP5Q5T4F7 317 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 SLITRK4Q8IW52 837 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 SLFN12Q8IYM2 578 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 FAM13CQ8NE31 585 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 BCL7CQ8WUZ0 217 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-207ENST00000558919 DPH2Q9BQC3 489 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-207ENST00000558919 SPON2Q9BUD6 331 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 BRMS1Q9HCU9 246 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 SLC5A6Q9Y289 635 aa6.27□□□□□ -1.41
VPS13C-207ENST00000558919 UPK3BL1B0FP48 263 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 UPK3BL2E5RIL1 263 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 APOBRQ0VD83 1088 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 ZNF394Q53GI3 561 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 NFXL1Q6ZNB6 911 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 METTL16Q86W50 562 aaKnown RBP6.26□□□□□ -1.41
VPS13C-207ENST00000558919 REXO1Q8N1G1 1221 aaKnown RBP6.26□□□□□ -1.41
VPS13C-207ENST00000558919 CYB5D2Q8WUJ1 264 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 NKD1Q969G9 470 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 EAF1Q96JC9 268 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-207ENST00000558919 HRASLS5Q96KN8 279 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 EHMT1Q9H9B1 1298 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 UBP1Q9NZI7 540 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 DDX41Q9UJV9 622 aaKnown RBP6.26□□□□□ -1.41
VPS13C-207ENST00000558919 CEP131Q9UPN4 1083 aa6.26□□□□□ -1.41
VPS13C-207ENST00000558919 ITIH2P19823 946 aa6.25□□□□□ -1.41
VPS13C-207ENST00000558919 ETV3P41162 512 aa6.25□□□□□ -1.41
VPS13C-207ENST00000558919 KIR3DL1P43629 444 aa6.25□□□□□ -1.41
VPS13C-207ENST00000558919 ZNF165P49910 485 aa6.25□□□□□ -1.41
VPS13C-207ENST00000558919 CLCN7P51798 805 aa6.25□□□□□ -1.41
VPS13C-207ENST00000558919 NKPD1Q17RQ9 610 aa6.25□□□□□ -1.41
VPS13C-207ENST00000558919 SEZ6Q53EL9 994 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms