RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 MS4A4AQ96JQ5 239 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 ANTXR1Q9H6X2 564 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 MCM9Q9NXL9 1143 aa10.4□□□□□ -0.74
USP3-208ENST00000558285 DOCK2Q92608 1830 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 PHF20L1A8MW92 1017 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 C19orf81C9J6K1 198 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 OSBPP22059 807 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 PRMT2P55345 433 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 CRHR2Q13324 411 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 PROCA1Q8NCQ7 364 aaPredicted RBP10.39□□□□□ -0.75
USP3-208ENST00000558285 ZNF280CQ8ND82 737 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 SMCR8Q8TEV9 937 aaPredicted RBP10.39□□□□□ -0.75
USP3-208ENST00000558285 GTF3C2Q8WUA4 911 aaPredicted RBP10.39□□□□□ -0.75
USP3-208ENST00000558285 ZNF296Q8WUU4 475 aaPredicted RBP10.39□□□□□ -0.75
USP3-208ENST00000558285 BRI3BPQ8WY22 251 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 FSD1Q9BTV5 496 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 SH2D4AQ9H788 454 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 SAP30BPQ9UHR5 308 aaKnown RBP10.39□□□□□ -0.75
USP3-208ENST00000558285 PALD1Q9ULE6 856 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 CEP350Q5VT06 3117 aa10.39□□□□□ -0.75
USP3-208ENST00000558285 IGF2BP3O00425 579 aaKnown RBP eCLIP10.38□□□□□ -0.75
USP3-208ENST00000558285 RNF113AO15541 343 aaKnown RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 MBD4O95243 580 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 USP14P54578 494 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 MFAP1P55081 439 aaKnown RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 DYNLL1P63167 89 aaKnown RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 GIMAP6Q6P9H5 292 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 GADL1Q6ZQY3 521 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 SH3BP5LQ7L8J4 393 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 ADGRA1Q86SQ6 560 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 APPBP2Q92624 585 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 EVI5LQ96CN4 794 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 FEZ1Q99689 392 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 ARPP21Q9UBL0 812 aaPredicted RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 A0A0G2JLL6 359 aaPredicted RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 TRIM75PA6NK02 468 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 PDHXO00330 501 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 TLR2O60603 784 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 GJA5P36382 358 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 CERKLQ49MI3 558 aaPredicted RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 PPP4R3BQ5MIZ7 849 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 PRRT2Q7Z6L0 340 aaPredicted RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 METTL16Q86W50 562 aaKnown RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 ABHD8Q96I13 439 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 CCDC17Q96LX7 622 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 RIOK1Q9BRS2 568 aaKnown RBP10.38□□□□□ -0.75
USP3-208ENST00000558285 EFCC1Q9HA90 598 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 AFG3L2Q9Y4W6 797 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 NDUFB9Q9Y6M9 179 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 SLC4A4Q9Y6R1 1079 aa10.38□□□□□ -0.75
USP3-208ENST00000558285 BTBD19C9JJ37 291 aa10.37□□□□□ -0.75
USP3-208ENST00000558285 APPP05067 770 aa10.37□□□□□ -0.75
USP3-208ENST00000558285 GCLCP48506 637 aaPredicted RBP10.37□□□□□ -0.75
USP3-208ENST00000558285 ABCB5Q2M3G0 1257 aa10.37□□□□□ -0.75
USP3-208ENST00000558285 FBXO46Q6PJ61 603 aaPredicted RBP10.37□□□□□ -0.75
USP3-208ENST00000558285 WDR18Q9BV38 432 aa10.37□□□□□ -0.75
USP3-208ENST00000558285 MCOLN1Q9GZU1 580 aa10.37□□□□□ -0.75
USP3-208ENST00000558285 AGTPBP1Q9UPW5 1226 aa10.37□□□□□ -0.75
USP3-208ENST00000558285 USP17L10C9JJH3 530 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 HIP1O00291 1037 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 IRX3P78415 501 aaPredicted RBP10.36□□□□□ -0.75
USP3-208ENST00000558285 SPP2Q13103 211 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 NBPF11Q86T75 865 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 CCAR1Q8IX12 1150 aaKnown RBP10.36□□□□□ -0.75
USP3-208ENST00000558285 FAM43AQ8N2R8 423 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 ARMT1Q9H993 441 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 ZBTB21Q9ULJ3 1066 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 TRIM17Q9Y577 477 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 TCRBV5S4A2TA0A5A2 114 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 MPHOSPH10O00566 681 aaKnown RBP10.36□□□□□ -0.75
USP3-208ENST00000558285 TDO2P48775 406 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 USP17L2Q6R6M4 530 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 CHD1LQ86WJ1 897 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 SMC5Q8IY18 1101 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 LCORLQ8N3X6 602 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 PTPN18Q99952 460 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 ARHGEF10LQ9HCE6 1279 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 DCP1AQ9NPI6 582 aaPredicted RBP10.36□□□□□ -0.75
USP3-208ENST00000558285 STAP2Q9UGK3 403 aa10.36□□□□□ -0.75
USP3-208ENST00000558285 OTOFQ9HC10 1997 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 CCDC85CA6NKD9 419 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 TRIM6-TRIM34B2RNG4 842 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 FCGRTP55899 365 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 BACE1P56817 501 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 RAB3GAP1Q15042 981 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 TATDN1Q6P1N9 297 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 TMEM179Q6ZVK1 233 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 EXOC6Q8TAG9 804 aa10.35□□□□□ -0.75
USP3-208ENST00000558285 GH2P01242 217 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 PDE1AP54750 535 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 PDE4BQ07343 736 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 SH3D19Q5HYK7 790 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 SDR42E1Q8WUS8 393 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 EDC3Q96F86 508 aaKnown RBP10.34□□□□□ -0.75
USP3-208ENST00000558285 MKNK2Q9HBH9 465 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 CWC22Q9HCG8 908 aaKnown RBP10.34□□□□□ -0.75
USP3-208ENST00000558285 DOCK1Q14185 1865 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 LAMB1P07942 1786 aa10.34□□□□□ -0.75
USP3-208ENST00000558285 FAM196BA6NMK8 535 aa10.33□□□□□ -0.76
USP3-208ENST00000558285 GPAA1O43292 621 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms