RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ZBTB48P10074 688 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-218ENST00000555213 HSPA4P34932 840 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 CAP2P40123 477 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 GABPAQ06546 454 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 NECTIN1Q15223 517 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 IMMTQ16891 758 aaKnown RBP12.94□□□□□ -0.34
SHMT2-218ENST00000555213 CERKLQ49MI3 558 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-218ENST00000555213 CYP4F22Q6NT55 531 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 TATDN1Q6P1N9 297 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 C16orf86Q6ZW13 317 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 ERO1BQ86YB8 467 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 UPF2Q9HAU5 1272 aaKnown RBP12.94□□□□□ -0.34
SHMT2-218ENST00000555213 MKNK2Q9HBH9 465 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 CABP5Q9NP86 173 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 ANO2Q9NQ90 1003 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 SNCAIPQ9Y6H5 919 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-218ENST00000555213 SIPA1L1O43166 1804 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 BAZ2AQ9UIF9 1905 aaKnown RBP12.94□□□□□ -0.34
SHMT2-218ENST00000555213 GDF11O95390 407 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 SHMT1P34896 483 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 CDK8P49336 464 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 PPATQ06203 517 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 ABCB5Q2M3G0 1257 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 RASEFQ8IZ41 740 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 SLC44A5Q8NCS7 719 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 OPTNQ96CV9 577 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 DYNLL2Q96FJ2 89 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 OTUD5Q96G74 571 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 WNK4Q96J92 1243 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 CCDC17Q96LX7 622 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 TBC1D2Q9BYX2 928 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 RNF41Q9H4P4 317 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-218ENST00000555213 ZBTB21Q9ULJ3 1066 aa12.93□□□□□ -0.34
SHMT2-218ENST00000555213 WDR33Q9C0J8 1336 aaKnown RBP12.92□□□□□ -0.34
SHMT2-218ENST00000555213 MPHOSPH10O00566 681 aaKnown RBP12.92□□□□□ -0.34
SHMT2-218ENST00000555213 ZNF213O14771 459 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 PCP11498 1178 aaKnown RBP12.92□□□□□ -0.34
SHMT2-218ENST00000555213 VEGFBP49765 207 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 PPIL2Q13356 520 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 DOCK1Q14185 1865 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 SPRYD7Q5W111 196 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 AS3MTQ9HBK9 375 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 ANAPC4Q9UJX5 808 aa12.92□□□□□ -0.34
SHMT2-218ENST00000555213 GH2P01242 217 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 SLURP2P0DP57 97 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 PTPRAP18433 802 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 MAP2K2P36507 400 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 NT5C2P49902 561 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 HAND2P61296 217 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 EVX2Q03828 476 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 SREBF2Q12772 1141 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 TMEM179Q6ZVK1 233 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 REM2Q8IYK8 340 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-218ENST00000555213 ZNF444Q8N0Y2 327 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-218ENST00000555213 STK11IPQ8N1F8 1099 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 IPO9Q96P70 1041 aaKnown RBP12.91□□□□□ -0.34
SHMT2-218ENST00000555213 TOMM22Q9NS69 142 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 ZHX2Q9Y6X8 837 aa12.91□□□□□ -0.34
SHMT2-218ENST00000555213 MANSC4A6NHS7 340 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-218ENST00000555213 USP17L5A8MUK1 530 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 FAM155AB1AL88 458 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-218ENST00000555213 GTF2A2P52657 109 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 CTDSPL2Q05D32 466 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 MKRN3Q13064 507 aaKnown RBP12.9□□□□□ -0.34
SHMT2-218ENST00000555213 SNAPC2Q13487 334 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 RAB3GAP1Q15042 981 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 PPP4R3BQ5MIZ7 849 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 RNF20Q5VTR2 975 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 MFSD6Q6ZSS7 791 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 FEZ1Q99689 392 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 SNX14Q9Y5W7 946 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 TAF6LQ9Y6J9 622 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 THSD7BQ9C0I4 1608 aa12.9□□□□□ -0.34
SHMT2-218ENST00000555213 ORC4O43929 436 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 PRDM1O75626 825 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 CD2BP2O95400 341 aaKnown RBP12.89□□□□□ -0.35
SHMT2-218ENST00000555213 TSPY3P0CV98 308 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 TSPY8P0CW00 308 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 CETPP11597 493 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 AKR1B1P15121 316 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 ANP32AP39687 249 aaKnown RBP12.89□□□□□ -0.35
SHMT2-218ENST00000555213 COL9A3Q14050 684 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-218ENST00000555213 RRP1BQ14684 758 aaKnown RBP12.89□□□□□ -0.35
SHMT2-218ENST00000555213 AKNAD1Q5T1N1 836 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 ZNF280CQ8ND82 737 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 STAG1Q8WVM7 1258 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 CNKSR2Q8WXI2 1034 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 SH2D4AQ9H788 454 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 CNNM2Q9H8M5 875 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 RBM8AQ9Y5S9 174 aaKnown RBP12.89□□□□□ -0.35
SHMT2-218ENST00000555213 LAMA4Q16363 1823 aa12.89□□□□□ -0.35
SHMT2-218ENST00000555213 TRIM75PA6NK02 468 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 TSPY2A6NKD2 308 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 SMIM22K7EJ46 135 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 CXCL11O14625 94 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 IRF6O14896 467 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 AOC2O75106 756 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 RASA1P20936 1047 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 INHBEP58166 350 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms