RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PRR14Q9BWN1 585 aa8.7□□□□□ -1.02
DEPDC4-208ENST00000549341 ZCCHC17Q9NP64 241 aaKnown RBP8.7□□□□□ -1.02
DEPDC4-208ENST00000549341 MTMR10Q9NXD2 777 aa8.7□□□□□ -1.02
DEPDC4-208ENST00000549341 C9orf78Q9NZ63 289 aaPredicted RBP8.7□□□□□ -1.02
DEPDC4-208ENST00000549341 CHMP3Q9Y3E7 222 aa8.7□□□□□ -1.02
DEPDC4-208ENST00000549341 IRS2Q9Y4H2 1338 aa8.7□□□□□ -1.02
DEPDC4-208ENST00000549341 ZNF646O15015 1829 aaPredicted RBP8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 ADCY3O60266 1144 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 SGPL1O95470 568 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 IGKV5-2P06315 115 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 SLC19A1P41440 591 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 MAGEA10P43363 369 aaPredicted RBP8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 RGS3P49796 1198 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 COPS2P61201 443 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 PPIL2Q13356 520 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 HSP90AB4PQ58FF6 505 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 LINS1Q8NG48 757 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 PAWRQ96IZ0 340 aaKnown RBP8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 FAM161BQ96MY7 647 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 PARK7Q99497 189 aaKnown RBP8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 MEIS3Q99687 375 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 GDF15Q99988 308 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 SERPINA10Q9UK55 444 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 GABRQQ9UN88 632 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 RPTORQ8N122 1335 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 EYSQ5T1H1 3165 aa8.69□□□□□ -1.02
DEPDC4-208ENST00000549341 NEURL1BA8MQ27 555 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 CYP2C8P10632 490 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 IL1R1P14778 569 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 CRKP46108 304 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 BEND3Q5T5X7 828 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 ANKRD45Q5TZF3 282 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 CEP85Q6P2H3 762 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 NECAB2Q7Z6G3 386 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 ANKRD23Q86SG2 305 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 TDHQ8IZJ6 230 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 UBE2OQ9C0C9 1292 aaKnown RBP8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 C1orf115Q9H7X2 142 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 TSHZ2Q9NRE2 1034 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 ADGRA2Q96PE1 1338 aa8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 LAMA2P24043 3122 aaKnown RBP8.68□□□□□ -1.02
DEPDC4-208ENST00000549341 ANKRD18BA2A2Z9 1011 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 C3orf80F5H4A9 247 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 TNPO2O14787 897 aaKnown RBP8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 FLT3LGP49771 235 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 FKBP1AP62942 108 aaKnown RBP8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 ATP8B2P98198 1209 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 NUCB1Q02818 461 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 CHAF1AQ13111 956 aaPredicted RBP8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 LRIT3Q3SXY7 679 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 MIGA2Q7L4E1 593 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 CHD1LQ86WJ1 897 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 DCTPP1Q9H773 170 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 PRDM6Q9NQX0 595 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 TMOD2Q9NZR1 351 aa8.67□□□□□ -1.02
DEPDC4-208ENST00000549341 SPEF2Q9C093 1822 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 LAMB1P07942 1786 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 GRM8O00222 908 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 RAB11FIP3O75154 756 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 INPP5BP32019 993 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 PRR20EP86478 221 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 PRR20CP86479 221 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 PRR20DP86480 221 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 PRR20BP86481 221 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 PRR20AP86496 221 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 TAF7LQ5H9L4 462 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 DCAF15Q66K64 600 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 GUCD1Q96NT3 240 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 USP44Q9H0E7 712 aa8.66□□□□□ -1.02
DEPDC4-208ENST00000549341 PRUNE2Q8WUY3 3088 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 MUC3AQ02505 3323 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 BMP8BP34820 402 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 GYG1P46976 350 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 PPATQ06203 517 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 IFIT5Q13325 482 aaKnown RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 GRIK5Q16478 980 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 TRIM67Q6ZTA4 783 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 C15orf52Q6ZUT6 534 aaKnown RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 SMCR8Q8TEV9 937 aaPredicted RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 HOOK2Q96ED9 719 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 ZNF341Q9BYN7 854 aa8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 UPF2Q9HAU5 1272 aaKnown RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 PAK6Q9NQU5 681 aaPredicted RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 IQSEC3Q9UPP2 1182 aaPredicted RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 LRRFIP2Q9Y608 721 aaKnown RBP8.65□□□□□ -1.02
DEPDC4-208ENST00000549341 FAM205AQ6ZU69 1335 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 GRXCR2A6NFK2 248 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 H7C1W4 665 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 BCRP11274 1271 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 ANP32AP39687 249 aaKnown RBP8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 MDM2Q00987 491 aaPredicted RBP8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 GCKRQ14397 625 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 SWT1Q5T5J6 900 aaKnown RBP8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 ZNF598Q86UK7 904 aaKnown RBP8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 ERC1Q8IUD2 1116 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 TEKT1Q969V4 418 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 ZNF594Q96JF6 807 aaPredicted RBP8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 PLA2G12BQ9BX93 195 aa8.64□□□□□ -1.03
DEPDC4-208ENST00000549341 LNPKQ9C0E8 428 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms