RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 COL2A1P02458 1487 aaPredicted RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 ZKSCAN1P17029 563 aaPredicted RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 CCND3P30281 292 aaPredicted RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 HOXA7P31268 230 aaPredicted RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 MTMR2Q13614 643 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 CCL14Q16627 93 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 FAM109BQ6ICB4 259 aaPredicted RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 TRMT44Q8IYL2 757 aaKnown RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 FAM9BQ8IZU0 186 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 GPRC5AQ8NFJ5 357 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 SOCS4Q8WXH5 440 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 USP6NLQ92738 828 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 XAGE2Q96GT9 111 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 WDR18Q9BV38 432 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 TSPYL2Q9H2G4 693 aaPredicted RBP15.78■□□□□ 0.12
SCAF11-208ENST00000546534 COPRSQ9NQ92 184 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 RBPJLQ9UBG7 517 aa15.78■□□□□ 0.12
SCAF11-208ENST00000546534 A0A1B0GUL7 405 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 MAP4K4O95819 1239 aaPredicted RBP15.77■□□□□ 0.12
SCAF11-208ENST00000546534 LDHCP07864 332 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 BACE1P56817 501 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 HERVK_113P62684 666 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 JAG1P78504 1218 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 PDE3AQ14432 1141 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 Q3C1V9 767 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 TBC1D9Q6ZT07 1266 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 NSUN4Q96CB9 384 aaKnown RBP15.77■□□□□ 0.12
SCAF11-208ENST00000546534 FAM161BQ96MY7 647 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 TMOD4Q9NZQ9 345 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 HMG20BQ9P0W2 317 aa15.77■□□□□ 0.12
SCAF11-208ENST00000546534 HERC5Q9UII4 1024 aaKnown RBP15.77■□□□□ 0.12
SCAF11-208ENST00000546534 MAPK4P31152 587 aa15.76■□□□□ 0.11
SCAF11-208ENST00000546534 GSTO1P78417 241 aa15.76■□□□□ 0.11
SCAF11-208ENST00000546534 TFCP2Q12800 502 aa15.76■□□□□ 0.11
SCAF11-208ENST00000546534 MVPQ14764 893 aaKnown RBP15.76■□□□□ 0.11
SCAF11-208ENST00000546534 PI16Q6UXB8 463 aa15.76■□□□□ 0.11
SCAF11-208ENST00000546534 TEX11Q8IYF3 940 aa15.76■□□□□ 0.11
SCAF11-208ENST00000546534 PORCNQ9H237 461 aa15.76■□□□□ 0.11
SCAF11-208ENST00000546534 RGS2P41220 211 aa15.75■□□□□ 0.11
SCAF11-208ENST00000546534 MORN1Q5T089 497 aa15.75■□□□□ 0.11
SCAF11-208ENST00000546534 POTEEQ6S8J3 1075 aa15.75■□□□□ 0.11
SCAF11-208ENST00000546534 GPR142Q7Z601 462 aa15.75■□□□□ 0.11
SCAF11-208ENST00000546534 AKAP2Q9Y2D5 859 aa15.75■□□□□ 0.11
SCAF11-208ENST00000546534 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.75■□□□□ 0.11
SCAF11-208ENST00000546534 ATAD5Q96QE3 1844 aa15.75■□□□□ 0.11
SCAF11-208ENST00000546534 C19orf81C9J6K1 198 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 ANP32CO43423 234 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 ASNSP08243 561 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 ERVK-9P63128 1117 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 ERVK-24P63145 666 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 SHROOM1Q2M3G4 852 aaPredicted RBP15.74■□□□□ 0.11
SCAF11-208ENST00000546534 PLEKHH3Q7Z736 793 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 CCAR1Q8IX12 1150 aaKnown RBP15.74■□□□□ 0.11
SCAF11-208ENST00000546534 SPATA5Q8NB90 893 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 SH3RF3Q8TEJ3 882 aaPredicted RBP15.74■□□□□ 0.11
SCAF11-208ENST00000546534 APBA2Q99767 749 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 PAGR1Q9BTK6 254 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 RAI14Q9P0K7 980 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 PI4KBQ9UBF8 816 aa15.74■□□□□ 0.11
SCAF11-208ENST00000546534 UNC80Q8N2C7 3258 aa15.73■□□□□ 0.11
SCAF11-208ENST00000546534 CHRM1P11229 460 aaPredicted RBP15.73■□□□□ 0.11
SCAF11-208ENST00000546534 ALDH1L2Q3SY69 923 aa15.73■□□□□ 0.11
SCAF11-208ENST00000546534 NEUROD6Q96NK8 337 aa15.73■□□□□ 0.11
SCAF11-208ENST00000546534 LBHD1Q9BQE6 289 aaPredicted RBP15.73■□□□□ 0.11
SCAF11-208ENST00000546534 SENP6Q9GZR1 1112 aaPredicted RBP15.73■□□□□ 0.11
SCAF11-208ENST00000546534 DHX36Q9H2U1 1008 aaKnown RBP15.73■□□□□ 0.11
SCAF11-208ENST00000546534 DNAJC18Q9H819 358 aa15.73■□□□□ 0.11
SCAF11-208ENST00000546534 SMC4Q9NTJ3 1288 aa15.73■□□□□ 0.11
SCAF11-208ENST00000546534 USP17L10C9JJH3 530 aa15.72■□□□□ 0.11
SCAF11-208ENST00000546534 E9PSI1 815 aa15.72■□□□□ 0.11
SCAF11-208ENST00000546534 MAP2K5Q13163 448 aa15.72■□□□□ 0.11
SCAF11-208ENST00000546534 MEIS3Q99687 375 aa15.72■□□□□ 0.11
SCAF11-208ENST00000546534 EMILIN3Q9NT22 766 aa15.72■□□□□ 0.11
SCAF11-208ENST00000546534 HDAC5Q9UQL6 1122 aa15.72■□□□□ 0.11
SCAF11-208ENST00000546534 GDF11O95390 407 aa15.71■□□□□ 0.11
SCAF11-208ENST00000546534 ATN1P54259 1190 aaPredicted RBP15.71■□□□□ 0.11
SCAF11-208ENST00000546534 GORABQ5T7V8 394 aa15.71■□□□□ 0.11
SCAF11-208ENST00000546534 ZNF697Q5TEC3 545 aa15.71■□□□□ 0.11
SCAF11-208ENST00000546534 EDC3Q96F86 508 aaKnown RBP15.71■□□□□ 0.11
SCAF11-208ENST00000546534 FLRT1Q9NZU1 646 aa15.71■□□□□ 0.11
SCAF11-208ENST00000546534 LRP2BPQ9P2M1 347 aa15.71■□□□□ 0.11
SCAF11-208ENST00000546534 NDUFB9Q9Y6M9 179 aa15.71■□□□□ 0.11
SCAF11-208ENST00000546534 CD44P16070 742 aaKnown RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 ARID4AP29374 1257 aaPredicted RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 SLFN5Q08AF3 891 aa15.7■□□□□ 0.1
SCAF11-208ENST00000546534 MFSD14CQ5VZR4 134 aa15.7■□□□□ 0.1
SCAF11-208ENST00000546534 METTL16Q86W50 562 aaKnown RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 FOXP4Q8IVH2 680 aaPredicted RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 MAPKAPK5Q8IW41 473 aa15.7■□□□□ 0.1
SCAF11-208ENST00000546534 GTF3C2Q8WUA4 911 aaPredicted RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 TGFBRAP1Q8WUH2 860 aa15.7■□□□□ 0.1
SCAF11-208ENST00000546534 CDX2Q99626 313 aaPredicted RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 CWC22Q9HCG8 908 aaKnown RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 ZBTB21Q9ULJ3 1066 aa15.7■□□□□ 0.1
SCAF11-208ENST00000546534 NOB1Q9ULX3 412 aaKnown RBP15.7■□□□□ 0.1
SCAF11-208ENST00000546534 SIPA1L1O43166 1804 aa15.7■□□□□ 0.1
SCAF11-208ENST00000546534 SRGAP3O43295 1099 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 CNMDO75829 334 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 MCAMP43121 646 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 CRACR2BQ8N4Y2 399 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms