RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ZIC5Q96T25 663 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 EHD4Q9H223 541 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 PICK1Q9NRD5 415 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 MANSC4A6NHS7 340 aaPredicted RBP14.88□□□□□ -0.03
VPS33A-207ENST00000542790 GPAA1O43292 621 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 PPATQ06203 517 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 SREBF2Q12772 1141 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 GIMAP6Q6P9H5 292 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 AMOTL1Q8IY63 956 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 SCYL3Q8IZE3 742 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 HELLSQ9NRZ9 838 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 SERPINB13Q9UIV8 391 aa14.88□□□□□ -0.03
VPS33A-207ENST00000542790 FAM196BA6NMK8 535 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 M0R2C6 588 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 CA12O43570 354 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 HSPA1AP0DMV8 641 aaKnown RBP14.87□□□□□ -0.03
VPS33A-207ENST00000542790 HSPA1BP0DMV9 641 aaKnown RBP14.87□□□□□ -0.03
VPS33A-207ENST00000542790 SLURP2P0DP57 97 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 TM4SF4P48230 202 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 PLCD1P51178 756 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 SLC4A8Q2Y0W8 1093 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 SEC62Q99442 399 aaKnown RBP14.87□□□□□ -0.03
VPS33A-207ENST00000542790 TAOK2Q9UL54 1235 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 DOCK2Q92608 1830 aa14.87□□□□□ -0.03
VPS33A-207ENST00000542790 PATL2C9JE40 543 aaKnown RBP14.86□□□□□ -0.03
VPS33A-207ENST00000542790 HIP1O00291 1037 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 APPP05067 770 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 SDSP20132 328 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 GJA5P36382 358 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 CAP2P40123 477 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 GTF2A2P52657 109 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 PPIL2Q13356 520 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 TTC22Q5TAA0 569 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 NACAP1Q9BZK3 213 aa14.86□□□□□ -0.03
VPS33A-207ENST00000542790 GSG1L2A8MUP6 293 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 USP17L12C9JPN9 530 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 USP17L21D6R901 530 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 PTPRAP18433 802 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 MCMDC2Q4G0Z9 681 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 C12orf60Q5U649 245 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 TATDN1Q6P1N9 297 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 DNAJC18Q9H819 358 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 GINM1Q9NU53 330 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 PPP4R2Q9NY27 417 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 ARPP21Q9UBL0 812 aaPredicted RBP14.85□□□□□ -0.03
VPS33A-207ENST00000542790 ZHX2Q9Y6X8 837 aa14.85□□□□□ -0.03
VPS33A-207ENST00000542790 TESPA1A2RU30 521 aaPredicted RBP14.84□□□□□ -0.03
VPS33A-207ENST00000542790 STK25O00506 426 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 IRF6O14896 467 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 GSPT1P15170 499 aaKnown RBP14.84□□□□□ -0.03
VPS33A-207ENST00000542790 GABPAQ06546 454 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 SNAPC2Q13487 334 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 SBK1Q52WX2 424 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 OTUD7BQ6GQQ9 843 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 CTR9Q6PD62 1173 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 MS4A4AQ96JQ5 239 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 FAM227BQ96M60 508 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 DIAPH3Q9NSV4 1193 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 SAGE1Q9NXZ1 904 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 SWAP70Q9UH65 585 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 STK24Q9Y6E0 443 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 CEP350Q5VT06 3117 aa14.84□□□□□ -0.03
VPS33A-207ENST00000542790 CXCL11O14625 94 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 ALDH1A1P00352 501 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 ASNSP08243 561 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 CYP2D6P10635 497 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 CETPP11597 493 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 TDO2P48775 406 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 MFAP1P55081 439 aaKnown RBP14.83□□□□□ -0.04
VPS33A-207ENST00000542790 NMIQ13287 307 aaPredicted RBP14.83□□□□□ -0.04
VPS33A-207ENST00000542790 RRP1BQ14684 758 aaKnown RBP14.83□□□□□ -0.04
VPS33A-207ENST00000542790 CERKLQ49MI3 558 aaPredicted RBP14.83□□□□□ -0.04
VPS33A-207ENST00000542790 IFNL3Q8IZI9 196 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 TBC1D2Q9BYX2 928 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 RNF186Q9NXI6 227 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 KCNH4Q9UQ05 1017 aa14.83□□□□□ -0.04
VPS33A-207ENST00000542790 CCL15-CCL14A0A0B4J2E2 113 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 A0A0D9SFI3 127 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 TRPA1O75762 1119 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 SHMT1P34896 483 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 CTCFP49711 727 aaPredicted RBP14.82□□□□□ -0.04
VPS33A-207ENST00000542790 CCL15Q16663 113 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 MAMSTRQ6ZN01 415 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 CCDC129Q6ZRS4 1044 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 AS3MTQ9HBK9 375 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 AFG3L2Q9Y4W6 797 aa14.82□□□□□ -0.04
VPS33A-207ENST00000542790 MYO5AQ9Y4I1 1855 aaKnown RBP14.82□□□□□ -0.04
VPS33A-207ENST00000542790 THSD7BQ9C0I4 1608 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 CYP2D7A0A087X1C5 515 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 USP17L5A8MUK1 530 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 MINDY4BA8MYZ0 360 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 FOXN1O15353 648 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 GDF11O95390 407 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 CWC27Q6UX04 472 aaKnown RBP14.81□□□□□ -0.04
VPS33A-207ENST00000542790 BRI3BPQ8WY22 251 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 NAPBQ9H115 298 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 EPB41L4AQ9HCS5 686 aaPredicted RBP14.81□□□□□ -0.04
VPS33A-207ENST00000542790 CABP5Q9NP86 173 aa14.81□□□□□ -0.04
VPS33A-207ENST00000542790 GH2P01242 217 aa14.8□□□□□ -0.04
VPS33A-207ENST00000542790 CDK8P49336 464 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms