RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF189O75820 626 aaPredicted RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 TCP1P17987 556 aaKnown RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 ST5P78524 1137 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 MRPS15P82914 257 aaKnown RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 GUCY2DQ02846 1103 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 NUTM2GQ5VZR2 741 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 C16orf71Q8IYS4 520 aaPredicted RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 ENAHQ8N8S7 591 aaPredicted RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 ANTXR1Q9H6X2 564 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 STX10O60499 249 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 TMEM67Q5HYA8 995 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 FAM173BQ6P4H8 233 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 TDRD7Q8NHU6 1098 aaKnown RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 TUBB6Q9BUF5 446 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 CFAP73A6NFT4 308 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 NMIQ13287 307 aaPredicted RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 DRP2Q13474 957 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 SLC35F6Q8N357 371 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 NCOA7Q8NI08 942 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 NAPBQ9H115 298 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 GIMAP4Q9NUV9 329 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 SBNO1A3KN83 1393 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 PTPDC1A2A3K4 754 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 FNBP4Q8N3X1 1017 aaPredicted RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 B4GALNT2Q8NHY0 566 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 CASP10Q92851 521 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 SH3GL2Q99962 352 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 RAD23BP54727 409 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 IL9RQ01113 521 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 PSME1Q06323 249 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 UBL4BQ8N7F7 174 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 IFIH1Q9BYX4 1025 aaKnown RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 INTUQ9ULD6 942 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 MEFVO15553 781 aaPredicted RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 VWA3BQ502W6 1294 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 STXBP4Q6ZWJ1 553 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 KRI1Q8N9T8 703 aaKnown RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 TRIML1Q8N9V2 468 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 HAUS4Q9H6D7 363 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 FLCNQ8NFG4 579 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 NRBF2Q96F24 287 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 CARD10Q9BWT7 1032 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 MRPS9P82933 396 aaKnown RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 C6orf118Q5T5N4 469 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 OLFML1Q6UWY5 402 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 CCDC80Q76M96 950 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 KIAA0825Q8IV33 1275 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 ATP6V0A1Q93050 837 aa9.67□□□□□ -0.86
YBX3-208ENST00000540447 MPHOSPH6Q99547 160 aaKnown RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 DDX28Q9NUL7 540 aaKnown RBP9.67□□□□□ -0.86
YBX3-208ENST00000540447 ZNF202O95125 648 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 SYF2O95926 243 aaKnown RBP9.66□□□□□ -0.86
YBX3-208ENST00000540447 IFIT1P09914 478 aaKnown RBP9.66□□□□□ -0.86
YBX3-208ENST00000540447 KLC1Q07866 573 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 CYLC2Q14093 348 aaPredicted RBP9.66□□□□□ -0.86
YBX3-208ENST00000540447 ARHGAP22Q7Z5H3 698 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 CCDC105Q8IYK2 499 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 TTLL11Q8NHH1 800 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 P3H4Q92791 437 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 RUSC2Q8N2Y8 1516 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 DIAPH2O60879 1101 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 ABCD1P33897 745 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 RAPGEF1Q13905 1077 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 TMEM154Q6P9G4 183 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 MSANTD4Q8NCY6 345 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 IL17RAQ96F46 866 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 DBNLQ9UJU6 430 aaKnown RBP9.66□□□□□ -0.86
YBX3-208ENST00000540447 TRIM75PA6NK02 468 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 KRT14P02533 472 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 PLEKHM2Q8IWE5 1019 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 SPATA17Q96L03 361 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 KIF21BO75037 1637 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 SART1O43290 800 aaKnown RBP9.66□□□□□ -0.86
YBX3-208ENST00000540447 SPOPO43791 374 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 MYSM1Q5VVJ2 828 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 CATIPQ7Z7H3 387 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 CWF19L2Q2TBE0 894 aaKnown RBP9.66□□□□□ -0.86
YBX3-208ENST00000540447 BEND3Q5T5X7 828 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 EFCAB2Q5VUJ9 269 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 CYTH2Q99418 400 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 MYO1AQ9UBC5 1043 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 PTPRCP08575 1304 aa9.66□□□□□ -0.86
YBX3-208ENST00000540447 GRAMD1BQ3KR37 738 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 SYCE1Q8N0S2 351 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 DPH5Q9H2P9 285 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 CD248Q9HCU0 757 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 HAUS2Q9NVX0 235 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 TAB2Q9NYJ8 693 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 MYOM3Q5VTT5 1437 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 F6X3S4 739 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 PAX7P23759 505 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 PAPOLAP51003 745 aaKnown RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 BLVRAP53004 296 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 RCN2Q14257 317 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 SULT6B1Q6IMI4 303 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 APLFQ8IW19 511 aaPredicted RBP9.65□□□□□ -0.86
YBX3-208ENST00000540447 CTAGE3PQ8IX95 158 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 TEKT4Q8WW24 435 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 PSD3Q9NYI0 1048 aa9.65□□□□□ -0.86
YBX3-208ENST00000540447 LRRC9Q6ZRR7 1453 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms