RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 P2RX7Q99572 595 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-208ENST00000538933 FAM196BA6NMK8 535 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 ZBTB22O15209 634 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 SLC5A1P13866 664 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 RFX5P48382 616 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 PABPC4Q13310 644 aaKnown RBP eCLIP15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 AAMPQ13685 434 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 MORN1Q5T089 497 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 ATG9AQ7Z3C6 839 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 SOCS4Q8WXH5 440 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 SENP6Q9GZR1 1112 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 RBPJLQ9UBG7 517 aa15.35■□□□□ 0.05
CLSTN3-208ENST00000538933 EYA2O00167 538 aa15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 TNFRSF10AO00220 468 aa15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 ZKSCAN1P17029 563 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 HOXA7P31268 230 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 SMAD3P84022 425 aaKnown RBP15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 Q3C1V9 767 aa15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 ERICH6BQ5W0A0 696 aa15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 OSBPL5Q9H0X9 879 aaPredicted RBP15.34■□□□□ 0.05
CLSTN3-208ENST00000538933 CHD7Q9P2D1 2997 aa15.33■□□□□ 0.05
CLSTN3-208ENST00000538933 XIRP2A4UGR9 3374 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 NPM3O75607 178 aaKnown RBP15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 CAP2P40123 477 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 RHBDL3P58872 404 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 TJAP1Q5JTD0 557 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 USP38Q8NB14 1042 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 GPRC5AQ8NFJ5 357 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 MEIS3Q99687 375 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 TBC1D2Q9BYX2 928 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 PORCNQ9H237 461 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 GTF3C3Q9Y5Q9 886 aa15.33■□□□□ 0.04
CLSTN3-208ENST00000538933 SIPA1L1O43166 1804 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 USP17L5A8MUK1 530 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 GNAI2P04899 355 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 FOSL2P15408 326 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 PLA2G5P39877 138 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 PHKA1P46020 1223 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 ATN1P54259 1190 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 PICALMQ13492 652 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 ZNF384Q8TF68 577 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 WDR18Q9BV38 432 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 DENND2AQ9ULE3 1009 aa15.32■□□□□ 0.04
CLSTN3-208ENST00000538933 SEMA3EO15041 775 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 MAPK4P31152 587 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 RTP1P59025 263 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 HERVK_113P62684 666 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 GPR142Q7Z601 462 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 USP44Q9H0E7 712 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 C1orf115Q9H7X2 142 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 FLRT1Q9NZU1 646 aa15.31■□□□□ 0.04
CLSTN3-208ENST00000538933 TRANK1O15050 2925 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 GPR75-ASB3A0A0A6YYF3 556 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 IGHA2P01877 340 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 RGS2P41220 211 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 BTDP43251 543 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 JAG1P78504 1218 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 LPAR1Q92633 364 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 APBA2Q99767 749 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 ZBTB40Q9NUA8 1239 aa15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 GNL3LQ9NVN8 582 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-208ENST00000538933 DNM1LO00429 736 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 BACE1P56817 501 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 ERVK-9P63128 1117 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 ERVK-24P63145 666 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 IRX3P78415 501 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 ATP2B3Q16720 1220 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 PLEKHH3Q7Z736 793 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 BADQ92934 168 aa15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 DDX20Q9UHI6 824 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-208ENST00000538933 MYO9BQ13459 2157 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 MROH7-TTC4A0A0A0MT08 1334 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 TMEM265A0A087WTH1 108 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 MAP2K5Q13163 448 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 MTMR2Q13614 643 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 GRIN2CQ14957 1233 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 SLC39A5Q6ZMH5 540 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 ZGPATQ8N5A5 531 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 TRPV1Q8NER1 839 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 CCDC136Q96JN2 1154 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 PPP4R2Q9NY27 417 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 PRKAG2Q9UGJ0 569 aa15.28■□□□□ 0.04
CLSTN3-208ENST00000538933 TRIM43BA6NCK2 446 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 ADORA1P30542 326 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 RASGRF1Q13972 1273 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 SNX17Q15036 470 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 SH3RF1Q7Z6J0 888 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 DZIP1Q86YF9 867 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 SLF2Q8IX21 1173 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 TRIM43Q96BQ3 446 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 EDC3Q96F86 508 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 AS3MTQ9HBK9 375 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 ATP11BQ9Y2G3 1177 aa15.27■□□□□ 0.04
CLSTN3-208ENST00000538933 PDS5AQ29RF7 1337 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 HMMRO75330 724 aa15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 CNMDO75829 334 aa15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 HOXD11P31277 338 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 EPHB4P54760 987 aa15.26■□□□□ 0.03
CLSTN3-208ENST00000538933 MECOMQ03112 1051 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms