RNA–Protein interactions for RNA: ENST00000535685.1

CCDC60-202, Transcript of coiled-coil domain containing 60, humanhuman

TSL 3

Gene CCDC60, Length 446 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-202ENST00000535685 FOXP4Q8IVH2 680 aaPredicted RBP13.16□□□□□ -0.3
CCDC60-202ENST00000535685 CLASRPQ8N2M8 674 aaKnown RBP13.16□□□□□ -0.3
CCDC60-202ENST00000535685 PARK7Q99497 189 aaKnown RBP13.16□□□□□ -0.3
CCDC60-202ENST00000535685 TRPC6Q9Y210 931 aa13.16□□□□□ -0.3
CCDC60-202ENST00000535685 ZSWIM8A7E2V4 1837 aa13.16□□□□□ -0.3
CCDC60-202ENST00000535685 SLURP2P0DP57 97 aa13.15□□□□□ -0.3
CCDC60-202ENST00000535685 BCRP11274 1271 aa13.15□□□□□ -0.3
CCDC60-202ENST00000535685 MAP3K12Q12852 859 aa13.15□□□□□ -0.3
CCDC60-202ENST00000535685 TTF1Q15361 905 aaPredicted RBP13.15□□□□□ -0.3
CCDC60-202ENST00000535685 FLT1P17948 1338 aa13.14□□□□□ -0.31
CCDC60-202ENST00000535685 CYP7A1P22680 504 aa13.14□□□□□ -0.31
CCDC60-202ENST00000535685 PROCA1Q8NCQ7 364 aaPredicted RBP13.14□□□□□ -0.31
CCDC60-202ENST00000535685 TGFBRAP1Q8WUH2 860 aa13.14□□□□□ -0.31
CCDC60-202ENST00000535685 WDR18Q9BV38 432 aa13.14□□□□□ -0.31
CCDC60-202ENST00000535685 IL1RAPL2Q9NP60 686 aa13.14□□□□□ -0.31
CCDC60-202ENST00000535685 USP17L5A8MUK1 530 aa13.13□□□□□ -0.31
CCDC60-202ENST00000535685 IDH1O75874 414 aaKnown RBP13.13□□□□□ -0.31
CCDC60-202ENST00000535685 RRP1BQ14684 758 aaKnown RBP13.13□□□□□ -0.31
CCDC60-202ENST00000535685 SH3D19Q5HYK7 790 aa13.13□□□□□ -0.31
CCDC60-202ENST00000535685 MAGEB6Q8N7X4 407 aa13.13□□□□□ -0.31
CCDC60-202ENST00000535685 ZNF280CQ8ND82 737 aa13.13□□□□□ -0.31
CCDC60-202ENST00000535685 ANTXR1Q9H6X2 564 aa13.13□□□□□ -0.31
CCDC60-202ENST00000535685 AGTPBP1Q9UPW5 1226 aa13.13□□□□□ -0.31
CCDC60-202ENST00000535685 FAM196BA6NMK8 535 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 ASNSP08243 561 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 HOXD10P28358 340 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 DYNLL1P63167 89 aaKnown RBP13.12□□□□□ -0.31
CCDC60-202ENST00000535685 C20orf194Q5TEA3 1177 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 NBPF11Q86T75 865 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 MAPKAPK5Q8IW41 473 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 ZNF333Q96JL9 665 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 ARHGAP39Q9C0H5 1083 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 EHD4Q9H223 541 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 DNAJC18Q9H819 358 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 CPA4Q9UI42 421 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 PTCH2Q9Y6C5 1203 aa13.12□□□□□ -0.31
CCDC60-202ENST00000535685 DDX60LQ5H9U9 1706 aaKnown RBP13.12□□□□□ -0.31
CCDC60-202ENST00000535685 TRIM75PA6NK02 468 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 HLA-DOAP06340 250 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 IFIT2P09913 472 aaKnown RBP13.11□□□□□ -0.31
CCDC60-202ENST00000535685 ATP5JP18859 108 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 CTGFP29279 349 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 PSMC4P43686 418 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 SPP2Q13103 211 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 E2F4Q16254 413 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 GADL1Q6ZQY3 521 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 TRIM47Q96LD4 638 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 RIOK1Q9BRS2 568 aaKnown RBP13.11□□□□□ -0.31
CCDC60-202ENST00000535685 AS3MTQ9HBK9 375 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 SRRDQ9UH36 339 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 PALD1Q9ULE6 856 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 CEP290O15078 2479 aa13.11□□□□□ -0.31
CCDC60-202ENST00000535685 NAV1Q8NEY1 1877 aa13.1□□□□□ -0.31
CCDC60-202ENST00000535685 CYP2C8P10632 490 aa13.1□□□□□ -0.31
CCDC60-202ENST00000535685 SLC9C1Q4G0N8 1177 aa13.1□□□□□ -0.31
CCDC60-202ENST00000535685 TATDN1Q6P1N9 297 aa13.1□□□□□ -0.31
CCDC60-202ENST00000535685 PNMA3Q9UL41 463 aa13.1□□□□□ -0.31
CCDC60-202ENST00000535685 NDUFB9Q9Y6M9 179 aa13.1□□□□□ -0.31
CCDC60-202ENST00000535685 MYH8P13535 1937 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 TCRBV5S4A2TA0A5A2 114 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 C19orf81C9J6K1 198 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 PDE6AP16499 860 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 OSBPP22059 807 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 HOXA7P31268 230 aaPredicted RBP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 TIE1P35590 1138 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 GCLCP48506 637 aaPredicted RBP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 FCGRTP55899 365 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 BACE1P56817 501 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 PABPC4Q13310 644 aaKnown RBP eCLIP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 SLC9C2Q5TAH2 1124 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 TTC6Q86TZ1 520 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 CCDC84Q86UT8 332 aaPredicted RBP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 CRACR2BQ8N4Y2 399 aaPredicted RBP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 MIGA1Q8NAN2 632 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 DCTPP1Q9H773 170 aa13.09□□□□□ -0.31
CCDC60-202ENST00000535685 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 MKI67P46013 3256 aaKnown RBP13.09□□□□□ -0.31
CCDC60-202ENST00000535685 BAZ2AQ9UIF9 1905 aaKnown RBP13.08□□□□□ -0.32
CCDC60-202ENST00000535685 MAGEB6P1A0A0J9YX57 407 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 POTEFA5A3E0 1075 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 USP5P45974 858 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 JAG1P78504 1218 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 FAM110CQ1W6H9 321 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 TREML2Q5T2D2 321 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 HAUS7Q99871 368 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 TRIM34Q9BYJ4 488 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 LRRCC1Q9C099 1032 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 SERPINB13Q9UIV8 391 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 ZBTB21Q9ULJ3 1066 aa13.08□□□□□ -0.32
CCDC60-202ENST00000535685 BRCA2P51587 3418 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 APBB1O00213 710 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 GOLIM4O00461 696 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 FMNL1O95466 1100 aaPredicted RBP13.07□□□□□ -0.32
CCDC60-202ENST00000535685 HMGCS2P54868 508 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 GABPAQ06546 454 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 SMCR8Q8TEV9 937 aaPredicted RBP13.07□□□□□ -0.32
CCDC60-202ENST00000535685 LARP6Q9BRS8 491 aaKnown RBP13.07□□□□□ -0.32
CCDC60-202ENST00000535685 CRNKL1Q9BZJ0 848 aaKnown RBP13.07□□□□□ -0.32
CCDC60-202ENST00000535685 PAG1Q9NWQ8 432 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 SAP30BPQ9UHR5 308 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms