RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	UBE2Q2L	H0YL09	131 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	SLC27A2	O14975	620 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	CAST	P20810	708 aa	Known RBP	11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	HOXD11	P31277	338 aa	Predicted RBP	11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	IREB2	P48200	963 aa	Known RBP	11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	FKBP1B	P68106	108 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	EVX2	Q03828	476 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	ALX1	Q15699	326 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	C12orf60	Q5U649	245 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	BLOC1S2	Q6QNY1	142 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	RASEF	Q8IZ41	740 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	JAKMIP1	Q96N16	626 aa	Known RBP	11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	EHD4	Q9H223	541 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	HERC5	Q9UII4	1024 aa	Known RBP	11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	SERPINB13	Q9UIV8	391 aa		11.14	□□□□□ -0.63
NXF1-209	ENST00000531474	SMIM22	K7EJ46	135 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	USP2	O75604	605 aa	Predicted RBP	11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	FGA	P02671	866 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	HUNK	P57058	714 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	PPARA	Q07869	468 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	SBK1	Q52WX2	424 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	STK11IP	Q8N1F8	1099 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	SLC44A5	Q8NCS7	719 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	DYNLL2	Q96FJ2	89 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	WRNIP1	Q96S55	665 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	UPF3B	Q9BZI7	483 aa	Known RBP	11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	CREBZF	Q9NS37	354 aa		11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	POLR2A	P24928	1970 aa	Known RBP	11.13	□□□□□ -0.63
NXF1-209	ENST00000531474	ZMYM6	O95789	1325 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	TRAK2	O60296	914 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	TBC1D12	O60347	775 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	SLC3A2	P08195	630 aa	Known RBP	11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	HAND2	P61296	217 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	MAP3K9	P80192	1104 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	KLRG1	Q96E93	195 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	DNAJC18	Q9H819	358 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	CSAD	Q9Y600	493 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	TLL2	Q9Y6L7	1015 aa		11.12	□□□□□ -0.63
NXF1-209	ENST00000531474	TRPM7	Q96QT4	1865 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	HSPA6	P17066	643 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	INPP5B	P32019	993 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	SHMT1	P34896	483 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	AK2	P54819	239 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	HTRA3	P83110	453 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	MAP3K10	Q02779	954 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	CTDSPL2	Q05D32	466 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	GABPA	Q06546	454 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	VGLL4	Q14135	290 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	MAP3K11	Q16584	847 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	SAPCD2	Q86UD0	394 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	METTL16	Q86W50	562 aa	Known RBP	11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	ANKRD13A	Q8IZ07	590 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	SWAP70	Q9UH65	585 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	ZNF112	Q9UJU3	913 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	ISY1	Q9ULR0	285 aa	Known RBP	11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	ATP6V1D	Q9Y5K8	247 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	ROBO3	Q96MS0	1386 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	SIPA1L1	O43166	1804 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	MYH1	P12882	1939 aa		11.11	□□□□□ -0.63
NXF1-209	ENST00000531474	WDR33	Q9C0J8	1336 aa	Known RBP	11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	PHF20L1	A8MW92	1017 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	ZNF213	O14771	459 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	GDF11	O95390	407 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	BAG4	O95429	457 aa	Known RBP	11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	RPS6KB1	P23443	525 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	CDK8	P49336	464 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	PLCB2	Q00722	1185 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	PDE4B	Q07343	736 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	RRP1B	Q14684	758 aa	Known RBP	11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	IMMT	Q16891	758 aa	Known RBP	11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	LDLRAD1	Q5T700	205 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	C16orf86	Q6ZW13	317 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	CLMN	Q96JQ2	1002 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	NEK1	Q96PY6	1258 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	ELP3	Q9H9T3	547 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	MKNK2	Q9HBH9	465 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	PICK1	Q9NRD5	415 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	TAOK2	Q9UL54	1235 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	SMC3	Q9UQE7	1217 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	SNCAIP	Q9Y6H5	919 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	LAMB1	P07942	1786 aa		11.1	□□□□□ -0.63
NXF1-209	ENST00000531474	MPHOSPH10	O00566	681 aa	Known RBP	11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	CTNND1	O60716	968 aa	Known RBP	11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	PRDM1	O75626	825 aa		11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	BRD1	O95696	1058 aa		11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	PDC	P20941	246 aa		11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	CAP2	P40123	477 aa		11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	GRM1	Q13255	1194 aa		11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	SHROOM1	Q2M3G4	852 aa	Predicted RBP	11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	ADCK5	Q3MIX3	580 aa		11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	CERKL	Q49MI3	558 aa	Predicted RBP	11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	L1TD1	Q5T7N2	865 aa	Known RBP	11.09	□□□□□ -0.63
NXF1-209	ENST00000531474	TATDN1	Q6P1N9	297 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms