RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 EVI5O60447 810 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 GDF11O95390 407 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 HOXA7P31268 230 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-201ENST00000526271 BACE1P56817 501 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 SSH3Q8TE77 659 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 PORCNQ9H237 461 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 C1orf115Q9H7X2 142 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 EMILIN3Q9NT22 766 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 PI4KBQ9UBF8 816 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 DBNLQ9UJU6 430 aaKnown RBP17.58■□□□□ 0.4
CPSF1-201ENST00000526271 NR2E3Q9Y5X4 410 aa17.58■□□□□ 0.4
CPSF1-201ENST00000526271 RLFQ13129 1914 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 RPTORQ8N122 1335 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 CNMDO75829 334 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 ZAP70P43403 619 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 EVX2Q03828 476 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 NAA16Q6N069 864 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-201ENST00000526271 LRP2BPQ9P2M1 347 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 OGDHLQ9ULD0 1010 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 ZMYND8Q9ULU4 1186 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-201ENST00000526271 NDUFB9Q9Y6M9 179 aa17.57■□□□□ 0.4
CPSF1-201ENST00000526271 UQCRFS1P1P0C7P4 283 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 RLBP1P12271 317 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 CYP2B6P20813 491 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 HERVK_113P62684 666 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 G3BP1Q13283 466 aaKnown RBP eCLIP17.56■□□□□ 0.4
CPSF1-201ENST00000526271 CCL14Q16627 93 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 TBC1D2Q9BYX2 928 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 GPR108Q9NPR9 543 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 SAP30BPQ9UHR5 308 aaKnown RBP17.56■□□□□ 0.4
CPSF1-201ENST00000526271 ZBTB21Q9ULJ3 1066 aa17.56■□□□□ 0.4
CPSF1-201ENST00000526271 MORN1Q5T089 497 aa17.55■□□□□ 0.4
CPSF1-201ENST00000526271 GORABQ5T7V8 394 aa17.55■□□□□ 0.4
CPSF1-201ENST00000526271 NECAB2Q7Z6G3 386 aa17.55■□□□□ 0.4
CPSF1-201ENST00000526271 C7orf61Q8IZ16 206 aa17.55■□□□□ 0.4
CPSF1-201ENST00000526271 FRAT1Q92837 279 aaPredicted RBP17.55■□□□□ 0.4
CPSF1-201ENST00000526271 EAF2Q96CJ1 260 aaPredicted RBP17.55■□□□□ 0.4
CPSF1-201ENST00000526271 A0A1W2PPC1 479 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 ASNSP08243 561 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 COL6A1P12109 1028 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 PRKAR2AP13861 404 aaKnown RBP17.54■□□□□ 0.4
CPSF1-201ENST00000526271 SYN1P17600 705 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 ATP8B2P98198 1209 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 LHX8Q68G74 356 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 ANKLE1Q8NAG6 615 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 ZNF512BQ96KM6 892 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-201ENST00000526271 DHX36Q9H2U1 1008 aaKnown RBP17.54■□□□□ 0.4
CPSF1-201ENST00000526271 ANTXR1Q9H6X2 564 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 UNC80Q8N2C7 3258 aa17.54■□□□□ 0.4
CPSF1-201ENST00000526271 CCND3P30281 292 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-201ENST00000526271 BMP8BP34820 402 aa17.53■□□□□ 0.4
CPSF1-201ENST00000526271 CACNB2Q08289 660 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-201ENST00000526271 FOXP4Q8IVH2 680 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-201ENST00000526271 HMX1Q9NP08 348 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-201ENST00000526271 FLRT1Q9NZU1 646 aa17.53■□□□□ 0.4
CPSF1-201ENST00000526271 NOP58Q9Y2X3 529 aaKnown RBP17.53■□□□□ 0.4
CPSF1-201ENST00000526271 IGHA2P01877 340 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 GUCY1A2P33402 732 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 ERVK-9P63128 1117 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 ERVK-24P63145 666 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 PABPC4Q13310 644 aaKnown RBP eCLIP17.52■□□□□ 0.45e-6■□□□□ 10
CPSF1-201ENST00000526271 TTC39AQ5SRH9 613 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 MIER1Q8N108 512 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 CCDC8Q9H0W5 538 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-201ENST00000526271 AS3MTQ9HBK9 375 aa17.52■□□□□ 0.4
CPSF1-201ENST00000526271 NAV1Q8NEY1 1877 aa17.52■□□□□ 0.39
CPSF1-201ENST00000526271 USP17L10C9JJH3 530 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 CCER2I3L3R5 266 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 GH2P01242 217 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 XRCC5P13010 732 aaKnown RBP17.51■□□□□ 0.39
CPSF1-201ENST00000526271 CAPN2P17655 700 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 MAGEA10P43363 369 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-201ENST00000526271 IRX3P78415 501 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-201ENST00000526271 TATDN1Q6P1N9 297 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 Q7L0L9 218 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 GPR142Q7Z601 462 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 MIGA1Q8NAN2 632 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 GPRC5AQ8NFJ5 357 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 ACER1Q8TDN7 264 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 C11orf49Q9H6J7 331 aa17.51■□□□□ 0.39
CPSF1-201ENST00000526271 A0A0G2JMZ2 1700 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 C19orf81C9J6K1 198 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 SURF6O75683 361 aaKnown RBP17.5■□□□□ 0.39
CPSF1-201ENST00000526271 BAG3O95817 575 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 CYP7A1P22680 504 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 C12orf42Q96LP6 360 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 NBPF3Q9H094 633 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 TMOD4Q9NZQ9 345 aa17.5■□□□□ 0.39
CPSF1-201ENST00000526271 PARP14Q460N5 1801 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 IPO8O15397 1037 aaKnown RBP17.49■□□□□ 0.39
CPSF1-201ENST00000526271 LRRC26Q2I0M4 334 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 NUDT12Q9BQG2 462 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 RIOK1Q9BRS2 568 aaKnown RBP17.49■□□□□ 0.39
CPSF1-201ENST00000526271 PAGR1Q9BTK6 254 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 BTBD7Q9P203 1132 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 EYSQ5T1H1 3165 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 LTBP2Q14767 1821 aa17.49■□□□□ 0.39
CPSF1-201ENST00000526271 PLCG2P16885 1265 aa17.48■□□□□ 0.39
CPSF1-201ENST00000526271 SHMT1P34896 483 aa17.48■□□□□ 0.39
CPSF1-201ENST00000526271 PLCD1P51178 756 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms