RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CABP5Q9NP86 173 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 WBP1LQ9NX94 342 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 ZHX2Q9Y6X8 837 aa17.02■□□□□ 0.32
NUP54-216ENST00000514901 DDX60LQ5H9U9 1706 aaKnown RBP17.01■□□□□ 0.31
NUP54-216ENST00000514901 SIPA1L1O43166 1804 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 CYP2D7A0A087X1C5 515 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 TESPA1A2RU30 521 aaPredicted RBP17.01■□□□□ 0.31
NUP54-216ENST00000514901 USP17L5A8MUK1 530 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 IRF6O14896 467 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 CETPP11597 493 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 CDK8P49336 464 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 RRP1BQ14684 758 aaKnown RBP17.01■□□□□ 0.31
NUP54-216ENST00000514901 OTUD7BQ6GQQ9 843 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 SKAP1Q86WV1 359 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 MS4A4AQ96JQ5 239 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 AS3MTQ9HBK9 375 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 KCNH4Q9UQ05 1017 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 AFG3L2Q9Y4W6 797 aa17.01■□□□□ 0.31
NUP54-216ENST00000514901 ZMYM6O95789 1325 aa17■□□□□ 0.31
NUP54-216ENST00000514901 THSD7BQ9C0I4 1608 aa17■□□□□ 0.31
NUP54-216ENST00000514901 ALDH1A1P00352 501 aa17■□□□□ 0.31
NUP54-216ENST00000514901 FGAP02671 866 aa17■□□□□ 0.31
NUP54-216ENST00000514901 ABCB5Q2M3G0 1257 aa17■□□□□ 0.31
NUP54-216ENST00000514901 VPS53Q5VIR6 699 aa17■□□□□ 0.31
NUP54-216ENST00000514901 DYNLL2Q96FJ2 89 aa17■□□□□ 0.31
NUP54-216ENST00000514901 DSCC1Q9BVC3 393 aa17■□□□□ 0.31
NUP54-216ENST00000514901 ZBTB21Q9ULJ3 1066 aa17■□□□□ 0.31
NUP54-216ENST00000514901 FOXP2O15409 715 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 GDF11O95390 407 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 GH2P01242 217 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 PDE4BQ07343 736 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 PPARAQ07869 468 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 ZNF280CQ8ND82 737 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 WDR18Q9BV38 432 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 MKNK2Q9HBH9 465 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 CTNNA3Q9UI47 895 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 ROBO3Q96MS0 1386 aa16.99■□□□□ 0.31
NUP54-216ENST00000514901 CCL15-CCL14A0A0B4J2E2 113 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 EVX2Q03828 476 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 CCL15Q16663 113 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 CASC1Q6TDU7 716 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 TMEM179Q6ZVK1 233 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 FASTKD5Q7L8L6 764 aaKnown RBP16.98■□□□□ 0.31
NUP54-216ENST00000514901 IFNL1Q8IU54 200 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 SLC44A5Q8NCS7 719 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 SAGE1Q9NXZ1 904 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 ANAPC4Q9UJX5 808 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 DOCK1Q14185 1865 aa16.98■□□□□ 0.31
NUP54-216ENST00000514901 SGSM2O43147 1006 aa16.97■□□□□ 0.31
NUP54-216ENST00000514901 HSPA1AP0DMV8 641 aaKnown RBP16.97■□□□□ 0.31
NUP54-216ENST00000514901 HSPA1BP0DMV9 641 aaKnown RBP16.97■□□□□ 0.31
NUP54-216ENST00000514901 ZNF444Q8N0Y2 327 aaPredicted RBP16.97■□□□□ 0.31
NUP54-216ENST00000514901 ZCCHC17Q9NP64 241 aaKnown RBP16.97■□□□□ 0.31
NUP54-216ENST00000514901 RNF186Q9NXI6 227 aa16.97■□□□□ 0.31
NUP54-216ENST00000514901 A0A0G2JLL6 359 aaPredicted RBP16.96■□□□□ 0.31
NUP54-216ENST00000514901 C19orf81C9J6K1 198 aa16.96■□□□□ 0.31
NUP54-216ENST00000514901 MPHOSPH10O00566 681 aaKnown RBP16.96■□□□□ 0.31
NUP54-216ENST00000514901 JAG1P78504 1218 aa16.96■□□□□ 0.31
NUP54-216ENST00000514901 SPP2Q13103 211 aa16.96■□□□□ 0.31
NUP54-216ENST00000514901 RAB3GAP1Q15042 981 aa16.96■□□□□ 0.31
NUP54-216ENST00000514901 PRRT2Q7Z6L0 340 aaPredicted RBP16.96■□□□□ 0.31
NUP54-216ENST00000514901 BRI3BPQ8WY22 251 aa16.96■□□□□ 0.31
NUP54-216ENST00000514901 TRIM75PA6NK02 468 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 USP17L10C9JJH3 530 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 SMIM22K7EJ46 135 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 CDC45O75419 566 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 PCP11498 1178 aaKnown RBP16.95■□□□□ 0.3
NUP54-216ENST00000514901 BACE1P56817 501 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 KIAA1211Q6ZU35 1233 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 PTPN18Q99952 460 aa16.95■□□□□ 0.3
NUP54-216ENST00000514901 ATAD5Q96QE3 1844 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 ZNF213O14771 459 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 TRPA1O75762 1119 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 FGRP09769 529 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 AKR1B1P15121 316 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 RASA1P20936 1047 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 CTCFP49711 727 aaPredicted RBP16.94■□□□□ 0.3
NUP54-216ENST00000514901 NT5C2P49902 561 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 SH3D19Q5HYK7 790 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 ANKRD23Q86SG2 305 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 CCDC84Q86UT8 332 aaPredicted RBP16.94■□□□□ 0.3
NUP54-216ENST00000514901 CFHR5Q9BXR6 569 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 KANSL2Q9H9L4 492 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.94■□□□□ 0.3
NUP54-216ENST00000514901 LAMB1P07942 1786 aa16.94■□□□□ 0.3
NUP54-216ENST00000514901 BTBD19C9JJ37 291 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 IGF2BP3O00425 579 aaKnown RBP eCLIP16.93■□□□□ 0.3
NUP54-216ENST00000514901 GUCY1A2P33402 732 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 USP14P54578 494 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 SEPT2Q15019 361 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 IMMTQ16891 758 aaKnown RBP16.93■□□□□ 0.3
NUP54-216ENST00000514901 SHROOM1Q2M3G4 852 aaPredicted RBP16.93■□□□□ 0.3
NUP54-216ENST00000514901 USP17L2Q6R6M4 530 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 STK11IPQ8N1F8 1099 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 PROCA1Q8NCQ7 364 aaPredicted RBP16.93■□□□□ 0.3
NUP54-216ENST00000514901 ESYT1Q9BSJ8 1104 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 IL25Q9H293 177 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 RNF41Q9H4P4 317 aaPredicted RBP16.93■□□□□ 0.3
NUP54-216ENST00000514901 TMOD4Q9NZQ9 345 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 SLC45A1Q9Y2W3 748 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms