RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 CHPF2Q9P2E5 772 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 NUDCQ9Y266 331 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 AFG3L2Q9Y4W6 797 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 MTCH2Q9Y6C9 303 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 PTPRFP10586 1907 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 TRIOO75962 3097 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 TRIM75PA6NK02 468 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 PTPRAP18433 802 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 ADCYAP1R1P41586 468 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 TREML2Q5T2D2 321 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 RASIP1Q5U651 963 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 PPP2R2DQ66LE6 453 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 C15orf52Q6ZUT6 534 aaKnown RBP9.85□□□□□ -0.83
CLDND1-229ENST00000513988 SCYL3Q8IZE3 742 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 TTLL11Q8NHH1 800 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 FERMT2Q96AC1 680 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 MPHOSPH8Q99549 860 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 APBA2Q99767 749 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 TMEM39AQ9NV64 488 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 FAM86C1Q9NVL1 165 aa9.85□□□□□ -0.83
CLDND1-229ENST00000513988 YBX2Q9Y2T7 364 aaKnown RBP9.85□□□□□ -0.83
CLDND1-229ENST00000513988 SNAP23O00161 211 aa9.84□□□□□ -0.83
CLDND1-229ENST00000513988 POU3F3P20264 500 aaPredicted RBP9.84□□□□□ -0.83
CLDND1-229ENST00000513988 CHRNDQ07001 517 aa9.84□□□□□ -0.83
CLDND1-229ENST00000513988 PPIGQ13427 754 aaKnown RBP eCLIP9.84□□□□□ -0.83
CLDND1-229ENST00000513988 TMEM240Q5SV17 173 aa9.84□□□□□ -0.83
CLDND1-229ENST00000513988 CC2D1BQ5T0F9 858 aaKnown RBP9.84□□□□□ -0.83
CLDND1-229ENST00000513988 CCAR1Q8IX12 1150 aaKnown RBP9.84□□□□□ -0.83
CLDND1-229ENST00000513988 CCDC191Q8NCU4 936 aa9.84□□□□□ -0.83
CLDND1-229ENST00000513988 MORF4L1Q9UBU8 362 aa9.84□□□□□ -0.83
CLDND1-229ENST00000513988 BOLA1Q9Y3E2 137 aa9.84□□□□□ -0.83
CLDND1-229ENST00000513988 UTYO14607 1347 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 GBF1Q92538 1859 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 MED19A0JLT2 244 aaPredicted RBP9.83□□□□□ -0.84
CLDND1-229ENST00000513988 POTEB3A0JP26 581 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 PQBP1O60828 265 aaKnown RBP9.83□□□□□ -0.84
CLDND1-229ENST00000513988 PABPC4Q13310 644 aaKnown RBP eCLIP9.83□□□□□ -0.84
CLDND1-229ENST00000513988 POTEBQ6S5H4 581 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 SLC44A5Q8NCS7 719 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 TDRD7Q8NHU6 1098 aaKnown RBP9.83□□□□□ -0.84
CLDND1-229ENST00000513988 USP6NLQ92738 828 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 TEKT1Q969V4 418 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 CFAP53Q96M91 514 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 CNTNAP3BQ96NU0 1288 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 CNTNAP3Q9BZ76 1288 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 CWC25Q9NXE8 425 aaPredicted RBP9.83□□□□□ -0.84
CLDND1-229ENST00000513988 DLG5Q8TDM6 1919 aa9.83□□□□□ -0.84
CLDND1-229ENST00000513988 RFXAPO00287 272 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 NEFMP07197 916 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 MAPK4P31152 587 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 HDLBPQ00341 1268 aaKnown RBP9.82□□□□□ -0.84
CLDND1-229ENST00000513988 TCF15Q12870 199 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 PSRC1Q6PGN9 363 aaPredicted RBP9.82□□□□□ -0.84
CLDND1-229ENST00000513988 PROCA1Q8NCQ7 364 aaPredicted RBP9.82□□□□□ -0.84
CLDND1-229ENST00000513988 FAM151AQ8WW52 585 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 MYD88Q99836 296 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 ASCC2Q9H1I8 757 aaPredicted RBP9.82□□□□□ -0.84
CLDND1-229ENST00000513988 MTIF3Q9H2K0 278 aaKnown RBP9.82□□□□□ -0.84
CLDND1-229ENST00000513988 MYH3P11055 1940 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 ZNF521Q96K83 1311 aa9.82□□□□□ -0.84
CLDND1-229ENST00000513988 GVINP1Q7Z2Y8 2422 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 TAF5LO75529 589 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 MORN1Q5T089 497 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 KRT40Q6A162 431 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 ZNF365Q70YC5 407 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 C16orf59Q7L2K0 433 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 MARVELD3Q96A59 401 aa9.81□□□□□ -0.84
CLDND1-229ENST00000513988 CWC22Q9HCG8 908 aaKnown RBP9.81□□□□□ -0.84
CLDND1-229ENST00000513988 DBF4Q9UBU7 674 aaPredicted RBP9.81□□□□□ -0.84
CLDND1-229ENST00000513988 SETXQ7Z333 2677 aaKnown RBP9.81□□□□□ -0.84
CLDND1-229ENST00000513988 FASNP49327 2511 aaKnown RBP9.81□□□□□ -0.84
CLDND1-229ENST00000513988 ATRNL1Q5VV63 1379 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 SOWAHBA6NEL2 793 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 APBB1O00213 710 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 TIMP1P01033 207 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 SLC5A1P13866 664 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 TCP10Q12799 353 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 MFSD5Q6N075 450 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 GPR142Q7Z601 462 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 PLEKHH3Q7Z736 793 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 GPRC5AQ8NFJ5 357 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 ATOH1Q92858 354 aaPredicted RBP9.8□□□□□ -0.84
CLDND1-229ENST00000513988 ZDHHC15Q96MV8 337 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 IRF2BPLQ9H1B7 796 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 WDR87Q6ZQQ6 2873 aa9.8□□□□□ -0.84
CLDND1-229ENST00000513988 PHF20L1A8MW92 1017 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 DCDC2CA8MYV0 355 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 ACRP10323 421 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 ITGA6P23229 1130 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 RABGGTBP53611 331 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 ATP2B2Q01814 1243 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 MAP2K5Q13163 448 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 ACAP1Q15027 740 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 EPHA10Q5JZY3 1008 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 HDGFL1Q5TGJ6 251 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 ANO1Q5XXA6 986 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 EDC3Q96F86 508 aaKnown RBP9.79□□□□□ -0.84
CLDND1-229ENST00000513988 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.79□□□□□ -0.841e-6■■■□□ 18.4
CLDND1-229ENST00000513988 HYPKQ9NX55 129 aa9.79□□□□□ -0.84
CLDND1-229ENST00000513988 FLRT1Q9NZU1 646 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms