RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 ADCY3O60266 1144 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 CD68P34810 354 aaPredicted RBP5.82□□□□□ -1.48
USP53-204ENST00000507906 NKG7Q16617 165 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 ZBTB37Q5TC79 503 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 FOXB2Q5VYV0 432 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 KIAA1211LQ6NV74 962 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 VHLLQ6RSH7 139 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 TMEM192Q8IY95 271 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 THAP3Q8WTV1 239 aaPredicted RBP5.82□□□□□ -1.48
USP53-204ENST00000507906 APPBP2Q92624 585 aa5.82□□□□□ -1.48
USP53-204ENST00000507906 TMPRSS2O15393 492 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 NEFMP07197 916 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 SSRP1Q08945 709 aaKnown RBP5.81□□□□□ -1.48
USP53-204ENST00000507906 C16orf86Q6ZW13 317 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 PPFIBP1Q86W92 1011 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 HOMER1Q86YM7 354 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 RPUSD2Q8IZ73 545 aaKnown RBP5.81□□□□□ -1.48
USP53-204ENST00000507906 ST13P5Q8NFI4 369 aaPredicted RBP5.81□□□□□ -1.48
USP53-204ENST00000507906 NEDD1Q8NHV4 660 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 DPH2Q9BQC3 489 aaPredicted RBP5.81□□□□□ -1.48
USP53-204ENST00000507906 PCDH12Q9NPG4 1184 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 FAM86C1Q9NVL1 165 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 CRIM1Q9NZV1 1036 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 SUSD2Q9UGT4 822 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 ZNF214Q9UL59 606 aaPredicted RBP5.81□□□□□ -1.48
USP53-204ENST00000507906 COL4A3BPQ9Y5P4 624 aa5.81□□□□□ -1.48
USP53-204ENST00000507906 RAB11FIP3O75154 756 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 UBOX5O94941 541 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 BCRP11274 1271 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 DRD2P14416 443 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 ETF1P62495 437 aaKnown RBP5.8□□□□□ -1.48
USP53-204ENST00000507906 ERVK-24P63145 666 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 AMPD3Q01432 767 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 CBX2Q14781 532 aaPredicted RBP5.8□□□□□ -1.48
USP53-204ENST00000507906 SLC10A6Q3KNW5 377 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 AKAP4Q5JQC9 854 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 EXOSC6Q5RKV6 272 aaKnown RBP5.8□□□□□ -1.48
USP53-204ENST00000507906 DIEXFQ68CQ4 756 aaKnown RBP5.8□□□□□ -1.48
USP53-204ENST00000507906 KIAA1211Q6ZU35 1233 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 MCATQ8IVS2 390 aaKnown RBP5.8□□□□□ -1.48
USP53-204ENST00000507906 SCARF2Q96GP6 870 aaPredicted RBP5.8□□□□□ -1.48
USP53-204ENST00000507906 KIF2CQ99661 725 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 LGR4Q9BXB1 951 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 TMPRSS13Q9BYE2 586 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 ADAM30Q9UKF2 790 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 CD2APQ9Y5K6 639 aa5.8□□□□□ -1.48
USP53-204ENST00000507906 C9IYK1 514 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 SUSD5O60279 629 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 ASMTLO95671 621 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 SLFN14P0C7P3 912 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 MASP1P48740 699 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 DGKGP49619 791 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 ID3Q02535 119 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 PDE4BQ07343 736 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 SLBPQ14493 270 aaKnown RBP eCLIP5.79□□□□□ -1.48
USP53-204ENST00000507906 RNF187Q5TA31 235 aaPredicted RBP5.79□□□□□ -1.48
USP53-204ENST00000507906 TRIM11Q96F44 468 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 TMEM87BQ96K49 555 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 FANCD2OSQ96PS1 177 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 SPATA9Q9BWV2 254 aa5.79□□□□□ -1.48
USP53-204ENST00000507906 PHAXQ9H814 394 aaKnown RBP5.79□□□□□ -1.48
USP53-204ENST00000507906 DNAJC6O75061 913 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 CLSTN1O94985 981 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 RAG1P15918 1043 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 SLC7A5Q01650 507 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 NCAPHQ15003 741 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 GNPTABQ3T906 1256 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 DALRD3Q5D0E6 543 aaKnown RBP5.78□□□□□ -1.48
USP53-204ENST00000507906 YOD1Q5VVQ6 348 aaPredicted RBP5.78□□□□□ -1.48
USP53-204ENST00000507906 TDRD10Q5VZ19 366 aaKnown RBP5.78□□□□□ -1.48
USP53-204ENST00000507906 EEPD1Q7L9B9 569 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 FBXO11Q86XK2 927 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 SLFN12Q8IYM2 578 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 FAM13CQ8NE31 585 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 BAHD1Q8TBE0 780 aaPredicted RBP5.78□□□□□ -1.48
USP53-204ENST00000507906 FAM126AQ9BYI3 521 aaPredicted RBP5.78□□□□□ -1.48
USP53-204ENST00000507906 SPC25Q9HBM1 224 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 RAD18Q9NS91 495 aa5.78□□□□□ -1.48
USP53-204ENST00000507906 NOP58Q9Y2X3 529 aaKnown RBP5.78□□□□□ -1.48
USP53-204ENST00000507906 SYNGAP1Q96PV0 1343 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 hCG_2014768A0A024R1R8 64 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 A0A0A0MRY4 1105 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 FAM229AH3BQW9 127 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 RGS13O14921 159 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 FANCGO15287 622 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 EIF4EBP3O60516 100 aaPredicted RBP5.77□□□□□ -1.49
USP53-204ENST00000507906 TP53P04637 393 aaPredicted RBP5.77□□□□□ -1.49
USP53-204ENST00000507906 HCLS1P14317 486 aaPredicted RBP5.77□□□□□ -1.49
USP53-204ENST00000507906 AMPD1P23109 780 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 L1CAMP32004 1257 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 SNRPNP63162 240 aaKnown RBP5.77□□□□□ -1.49
USP53-204ENST00000507906 IGBP1P78318 339 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 MLECQ14165 292 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 TTLL4Q14679 1199 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 DUOXA2Q1HG44 320 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 PLA2G4EQ3MJ16 856 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 AXDND1Q5T1B0 1012 aaPredicted RBP5.77□□□□□ -1.49
USP53-204ENST00000507906 TRAPPC3LQ5T215 181 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 LINC00114Q6XXX2 140 aa5.77□□□□□ -1.49
USP53-204ENST00000507906 MAP4K3Q8IVH8 894 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms