RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 TM4SF4P48230 202 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 CEP68Q76N32 757 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 GET4Q7L5D6 327 aaPredicted RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 YY1AP1Q9H869 796 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 GEMIN8Q9NWZ8 242 aaKnown RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 SMC3Q9UQE7 1217 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 PPP2R3BQ9Y5P8 575 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 EMILIN1Q9Y6C2 1016 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 B4DLN1 442 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 GCLCP48506 637 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 MRPL12P52815 198 aaKnown RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 TCP10Q12799 353 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 GRAPQ13588 217 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 CC2D1AQ6P1N0 951 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 FAM114A1Q8IWE2 563 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 GRAPLQ8TC17 118 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 RPGRIP1Q96KN7 1286 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 CLDND1Q9NY35 253 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 TSPYL4Q9UJ04 414 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 EP300Q09472 2414 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 CEP250Q9BV73 2442 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 TLL1O43897 1013 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 CCDC172P0C7W6 258 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 SYCP1Q15431 976 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 ZKSCAN8Q15776 578 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 CFAP100Q494V2 611 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 EGFL6Q8IUX8 553 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 KIAA2013Q8IYS2 634 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 CCDC155Q8N6L0 562 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 ANKRD20A12PQ8NF67 263 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 BADQ92934 168 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 DDX49Q9Y6V7 483 aaKnown RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 HLA-DOAP06340 250 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 MNAT1P51948 309 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 BIRC2Q13490 618 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 CCDC57Q2TAC2 916 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 CCDC94Q9BW85 323 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 TRAIPQ9BWF2 469 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 HEMK1Q9Y5R4 338 aaPredicted RBP5.91□□□□□ -1.46
USP54-216ENST00000498143 KIF16BQ96L93 1317 aa5.91□□□□□ -1.46
USP54-216ENST00000498143 FBLN1P23142 703 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 COL9A2Q14055 689 aaPredicted RBP5.9□□□□□ -1.46
USP54-216ENST00000498143 SART3Q15020 963 aaKnown RBP5.9□□□□□ -1.46
USP54-216ENST00000498143 TSR1Q2NL82 804 aaKnown RBP5.9□□□□□ -1.46
USP54-216ENST00000498143 ANO1Q5XXA6 986 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 PTCRAQ6ISU1 281 aaPredicted RBP5.9□□□□□ -1.46
USP54-216ENST00000498143 NCAPG2Q86XI2 1143 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 SOCS4Q8WXH5 440 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 TEKT1Q969V4 418 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 USP25Q9UHP3 1055 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 INF2Q27J81 1249 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 CCDC73Q6ZRK6 1079 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 RNF214Q8ND24 703 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 SGSM3Q96HU1 749 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 CALR3Q96L12 384 aaKnown RBP5.9□□□□□ -1.46
USP54-216ENST00000498143 SLC52A2Q9HAB3 445 aa5.9□□□□□ -1.46
USP54-216ENST00000498143 CHCHD3Q9NX63 227 aaKnown RBP5.9□□□□□ -1.46
USP54-216ENST00000498143 A0A1W2PP64 1363 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 GOLGA6CA6NDK9 693 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 GOLGA6BA6NDN3 693 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 GOLGA6DP0CG33 693 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 TERF1P54274 439 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 PICALMQ13492 652 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 TSHZ1Q6ZSZ6 1077 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 MIGA2Q7L4E1 593 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 CCDC191Q8NCU4 936 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 SPOCK3Q9BQ16 436 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 GOLGA6AQ9NYA3 693 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 SERPINA10Q9UK55 444 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 MYO6Q9UM54 1294 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 COL14A1Q05707 1796 aaKnown RBP5.9□□□□□ -1.47
USP54-216ENST00000498143 TPM1P09493 284 aa5.9□□□□□ -1.47
USP54-216ENST00000498143 IQCGQ9H095 443 aaKnown RBP5.9□□□□□ -1.47
USP54-216ENST00000498143 IPO8O15397 1037 aaKnown RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 PPFIA3O75145 1194 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 CLUL1Q15846 466 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 OTOP2Q7RTS6 562 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 EDC3Q96F86 508 aaKnown RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 BRMS1Q9HCU9 246 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 NUB1Q9Y5A7 615 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 MYOM1P52179 1685 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 TM4SF1P30408 202 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 TAF1BQ53T94 588 aaPredicted RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 DEFB128Q7Z7B8 93 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 ZSCAN30Q86W11 494 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 LARP6Q9BRS8 491 aaKnown RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 RASSF4Q9H2L5 321 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 DIAPH3Q9NSV4 1193 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 TCP11L1Q9NUJ3 509 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 ABCF2Q9UG63 623 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 PRR33A8MZF0 331 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 IRS4O14654 1257 aaPredicted RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 LDHCP07864 332 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 PSMC1P62191 440 aaKnown RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 CES5AQ6NT32 575 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 GIGYF2Q6Y7W6 1299 aaKnown RBP5.89□□□□□ -1.47
USP54-216ENST00000498143 ADSSL1Q8N142 457 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 SIN3AQ96ST3 1273 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 EYA1Q99502 592 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 NKX2-4Q9H2Z4 354 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms