RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TBC1D8BQ0IIM8 1120 aa14.61□□□□□ -0.07
COL6A3-212ENST00000491769 RUFY3Q7L099 469 aa14.61□□□□□ -0.07
COL6A3-212ENST00000491769 NELFCDQ8IXH7 590 aa14.61□□□□□ -0.07
COL6A3-212ENST00000491769 CALCOCO1Q9P1Z2 691 aa14.61□□□□□ -0.07
COL6A3-212ENST00000491769 SCNN1DP51172 638 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 PARD3BQ8TEW8 1205 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 VPS16Q9H269 839 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.6□□□□□ -0.07
COL6A3-212ENST00000491769 SAMD15Q9P1V8 674 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 CTTNBP2NLQ9P2B4 639 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 RSPH14Q9UHP6 348 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 SND1Q7KZF4 910 aaKnown RBP eCLIP14.6□□□□□ -0.07
COL6A3-212ENST00000491769 RDH13Q8NBN7 331 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 LRWD1Q9UFC0 647 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 LRMPQ12912 555 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 ZNF790Q6PG37 636 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 ZBTB8OSQ8IWT0 167 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 IFNKQ9P0W0 207 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 MYO1AQ9UBC5 1043 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 VAV2P52735 878 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 NONOQ15233 471 aaKnown RBP eCLIP14.6□□□□□ -0.07
COL6A3-212ENST00000491769 Q3C1V9 767 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 CHURC1Q8WUH1 139 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 SCYL2Q6P3W7 929 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 SUGCTQ9HAC7 445 aa14.6□□□□□ -0.07
COL6A3-212ENST00000491769 INTS8Q75QN2 995 aaKnown RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 ADPGKQ9BRR6 497 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 ANKFY1Q9P2R3 1169 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 GAS7O60861 476 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 TBC1D22AQ8WUA7 517 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 EIF4G3O43432 1585 aaKnown RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 ATF7P17544 494 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 XPAP23025 273 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 YWHAEP62258 255 aaKnown RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 MKRN3Q13064 507 aaKnown RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 MFSD14BQ5SR56 506 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 KCNA4P22459 653 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 PPP1R2P41236 205 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 CEP128Q6ZU80 1094 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 FLAD1Q8NFF5 587 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 RPS6KC1Q96S38 1066 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 UHRF1BP1Q6BDS2 1440 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 MNAT1P51948 309 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 FAM47AQ5JRC9 791 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 SEPT14Q6ZU15 432 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 ATP5DP30049 168 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 SDCCAG8Q86SQ7 713 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-212ENST00000491769 KIAA0825Q8IV33 1275 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 SEPT10Q9P0V9 454 aa14.59□□□□□ -0.07
COL6A3-212ENST00000491769 KRT81Q14533 505 aa14.58□□□□□ -0.07
COL6A3-212ENST00000491769 MUM1L1Q5H9M0 696 aa14.58□□□□□ -0.07
COL6A3-212ENST00000491769 METTL22Q9BUU2 404 aaPredicted RBP14.58□□□□□ -0.07
COL6A3-212ENST00000491769 DDX21Q9NR30 783 aaKnown RBP eCLIP14.58□□□□□ -0.07
COL6A3-212ENST00000491769 PPME1Q9Y570 386 aa14.58□□□□□ -0.07
COL6A3-212ENST00000491769 A0A1B0GVL5 298 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 FYB2Q5VWT5 728 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 TRIM50Q86XT4 487 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 GRIN2AQ12879 1464 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 KRT25Q7Z3Z0 450 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 SPATA5Q8NB90 893 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 CHMP6Q96FZ7 201 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 TMEM87BQ96K49 555 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 ELP1O95163 1332 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 ARHGAP44Q17R89 818 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 TNNI3KQ59H18 835 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 TTC38Q5R3I4 469 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 RYBPQ8N488 228 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-212ENST00000491769 TRIM31Q9BZY9 425 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 FPGT-TNNI3KV9GXZ4 949 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 VIMP08670 466 aaKnown RBP14.58□□□□□ -0.08
COL6A3-212ENST00000491769 TTC30AQ86WT1 665 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 CSGALNACT2Q8N6G5 542 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 KLHDC4Q8TBB5 520 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 ASIC3Q9UHC3 531 aa14.58□□□□□ -0.08
COL6A3-212ENST00000491769 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL6A3-212ENST00000491769 FRMPD2Q68DX3 1309 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-212ENST00000491769 SYNJ2BP-COX16A0A087WUM0 186 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 GPAA1O43292 621 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 DNAJC10Q8IXB1 793 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 LPIN2Q92539 896 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 COX16Q9P0S2 106 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 TNNC2P02585 160 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 KIF11P52732 1056 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 BEND3Q5T5X7 828 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 ORAI2Q96SN7 254 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 MYL10Q9BUA6 226 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 AP5M1Q9H0R1 490 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 QTRT2Q9H974 415 aaKnown RBP14.57□□□□□ -0.08
COL6A3-212ENST00000491769 ABCC1P33527 1531 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 URB2Q14146 1524 aaKnown RBP14.57□□□□□ -0.08
COL6A3-212ENST00000491769 LIG4P49917 911 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 TAOK1Q7L7X3 1001 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 STMN2Q93045 179 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 GOLGA6CA6NDK9 693 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 GOLGA6BA6NDN3 693 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 GOLGA6DP0CG33 693 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 GOLGA6AQ9NYA3 693 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 POLKQ9UBT6 870 aa14.57□□□□□ -0.08
COL6A3-212ENST00000491769 UTP11Q9Y3A2 253 aaKnown RBP14.57□□□□□ -0.08
COL6A3-212ENST00000491769 TRPM2O94759 1503 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms