RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PRDM10Q9NQV6 1147 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 SWAP70Q9UH65 585 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 AFG3L2Q9Y4W6 797 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 DOCK1Q14185 1865 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 PATL2C9JE40 543 aaKnown RBP19.04■□□□□ 0.64
UPF3A-208ENST00000484246 USP17L12C9JPN9 530 aa19.04■□□□□ 0.64
UPF3A-208ENST00000484246 USP17L21D6R901 530 aa19.04■□□□□ 0.64
UPF3A-208ENST00000484246 HIP1O00291 1037 aa19.04■□□□□ 0.64
UPF3A-208ENST00000484246 IGF2BP3O00425 579 aaKnown RBP eCLIP19.04■□□□□ 0.64
UPF3A-208ENST00000484246 CTR9Q6PD62 1173 aa19.04■□□□□ 0.64
UPF3A-208ENST00000484246 ZBTB21Q9ULJ3 1066 aa19.04■□□□□ 0.64
UPF3A-208ENST00000484246 CCL15-CCL14A0A0B4J2E2 113 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 A0A0D9SFI3 127 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 FOXP2O15409 715 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 CYP2D6P10635 497 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 SDSP20132 328 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 CCL15Q16663 113 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 SLC4A8Q2Y0W8 1093 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 MCMDC2Q4G0Z9 681 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 OTUD7BQ6GQQ9 843 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 RILPL2Q969X0 211 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 CCDC136Q96JN2 1154 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 FAM227BQ96M60 508 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 PTPN18Q99952 460 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 WDR18Q9BV38 432 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 ZHX2Q9Y6X8 837 aa19.03■□□□□ 0.64
UPF3A-208ENST00000484246 A0A0G2JLL6 359 aaPredicted RBP19.02■□□□□ 0.64
UPF3A-208ENST00000484246 USP17L5A8MUK1 530 aa19.02■□□□□ 0.64
UPF3A-208ENST00000484246 JAG1P78504 1218 aa19.02■□□□□ 0.64
UPF3A-208ENST00000484246 EVX2Q03828 476 aa19.02■□□□□ 0.64
UPF3A-208ENST00000484246 NMIQ13287 307 aaPredicted RBP19.02■□□□□ 0.64
UPF3A-208ENST00000484246 MOGSQ13724 837 aa19.02■□□□□ 0.64
UPF3A-208ENST00000484246 C16orf86Q6ZW13 317 aa19.02■□□□□ 0.64
UPF3A-208ENST00000484246 PRRT2Q7Z6L0 340 aaPredicted RBP19.02■□□□□ 0.64
UPF3A-208ENST00000484246 NACAP1Q9BZK3 213 aa19.02■□□□□ 0.64
UPF3A-208ENST00000484246 ZMYM6O95789 1325 aa19.01■□□□□ 0.63
UPF3A-208ENST00000484246 TRPA1O75762 1119 aa19.01■□□□□ 0.63
UPF3A-208ENST00000484246 CERKLQ49MI3 558 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-208ENST00000484246 IFNL3Q8IZI9 196 aa19.01■□□□□ 0.63
UPF3A-208ENST00000484246 ZNF280CQ8ND82 737 aa19.01■□□□□ 0.63
UPF3A-208ENST00000484246 AS3MTQ9HBK9 375 aa19.01■□□□□ 0.63
UPF3A-208ENST00000484246 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-208ENST00000484246 MYH1P12882 1939 aa19.01■□□□□ 0.63
UPF3A-208ENST00000484246 CCDC171Q6TFL3 1326 aa19■□□□□ 0.63
UPF3A-208ENST00000484246 AK9Q5TCS8 1911 aa19■□□□□ 0.63
UPF3A-208ENST00000484246 ALX1Q15699 326 aa19■□□□□ 0.63
UPF3A-208ENST00000484246 ANKRD23Q86SG2 305 aa19■□□□□ 0.63
UPF3A-208ENST00000484246 FRMD4AQ9P2Q2 1039 aaPredicted RBP19■□□□□ 0.63
UPF3A-208ENST00000484246 CYP2D7A0A087X1C5 515 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 BTBD19C9JJ37 291 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 GDF11O95390 407 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 GH2P01242 217 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 TDO2P48775 406 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 LBX1P52954 281 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 MFAP1P55081 439 aaKnown RBP18.99■□□□□ 0.63
UPF3A-208ENST00000484246 SH3D19Q5HYK7 790 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 CCDC129Q6ZRS4 1044 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 FASTKD5Q7L8L6 764 aaKnown RBP18.99■□□□□ 0.63
UPF3A-208ENST00000484246 FAM43AQ8N2R8 423 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 SLC44A5Q8NCS7 719 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 CCDC17Q96LX7 622 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 DIAPH3Q9NSV4 1193 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 SLC45A1Q9Y2W3 748 aa18.99■□□□□ 0.63
UPF3A-208ENST00000484246 CDK8P49336 464 aa18.98■□□□□ 0.63
UPF3A-208ENST00000484246 ABCB5Q2M3G0 1257 aa18.98■□□□□ 0.63
UPF3A-208ENST00000484246 SHROOM1Q2M3G4 852 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-208ENST00000484246 ZNF589Q86UQ0 364 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-208ENST00000484246 CCDC84Q86UT8 332 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-208ENST00000484246 PROCA1Q8NCQ7 364 aaPredicted RBP18.98■□□□□ 0.63
UPF3A-208ENST00000484246 DYNLL2Q96FJ2 89 aa18.98■□□□□ 0.63
UPF3A-208ENST00000484246 NAPBQ9H115 298 aa18.98■□□□□ 0.63
UPF3A-208ENST00000484246 RAD50Q92878 1312 aa18.98■□□□□ 0.63
UPF3A-208ENST00000484246 TRIM75PA6NK02 468 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 SMIM22K7EJ46 135 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 APPP05067 770 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 GUCY1A2P33402 732 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 SPP2Q13103 211 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 VPS53Q5VIR6 699 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 GPAT2Q6NUI2 795 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 TMEM179Q6ZVK1 233 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 CABP5Q9NP86 173 aa18.97■□□□□ 0.63
UPF3A-208ENST00000484246 PHIPQ8WWQ0 1821 aa18.96■□□□□ 0.63
UPF3A-208ENST00000484246 HSPD1P10809 573 aaKnown RBP18.96■□□□□ 0.63
UPF3A-208ENST00000484246 BACE1P56817 501 aa18.96■□□□□ 0.63
UPF3A-208ENST00000484246 PPP4R2Q9NY27 417 aa18.96■□□□□ 0.63
UPF3A-208ENST00000484246 TSKSQ9UJT2 592 aa18.96■□□□□ 0.63
UPF3A-208ENST00000484246 ANAPC4Q9UJX5 808 aa18.96■□□□□ 0.63
UPF3A-208ENST00000484246 AGTPBP1Q9UPW5 1226 aa18.96■□□□□ 0.63
UPF3A-208ENST00000484246 C19orf81C9J6K1 198 aa18.95■□□□□ 0.62
UPF3A-208ENST00000484246 CRHR2Q13324 411 aa18.95■□□□□ 0.62
UPF3A-208ENST00000484246 BMP2KLQ5H9B9 411 aa18.95■□□□□ 0.62
UPF3A-208ENST00000484246 CWC27Q6UX04 472 aaKnown RBP18.95■□□□□ 0.62
UPF3A-208ENST00000484246 C12orf42Q96LP6 360 aa18.95■□□□□ 0.62
UPF3A-208ENST00000484246 ZNF287Q9HBT7 754 aa18.95■□□□□ 0.62
UPF3A-208ENST00000484246 ADGRA2Q96PE1 1338 aa18.95■□□□□ 0.62
UPF3A-208ENST00000484246 PLIN4Q96Q06 1357 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 MINDY4BA8MYZ0 360 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 USP17L10C9JJH3 530 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 GPR25O00155 361 aa18.94■□□□□ 0.62
UPF3A-208ENST00000484246 TBC1D8O95759 1140 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms