RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 NEURL1BA8MQ27 555 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 EYA2O00167 538 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 A1BGP04217 495 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 CPLX4Q7Z7G2 160 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 IQUBQ8NA54 791 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 XAGE2Q96GT9 111 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 METTL22Q9BUU2 404 aaPredicted RBP15.22■□□□□ 0.03
USP42-206ENST00000479544 NAA15Q9BXJ9 866 aaKnown RBP15.22■□□□□ 0.03
USP42-206ENST00000479544 AATKQ6ZMQ8 1374 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 STX10O60499 249 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 GUCY2FP51841 1108 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 IFIT1BQ5T764 474 aaKnown RBP15.22■□□□□ 0.03
USP42-206ENST00000479544 SARM1Q6SZW1 724 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 CYP26C1Q6V0L0 522 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 CARMIL3Q8ND23 1372 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 TET3O43151 1660 aa15.22■□□□□ 0.03
USP42-206ENST00000479544 RNF40O75150 1001 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 CYP7A1P22680 504 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 MAP2K2P36507 400 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 RBL2Q08999 1139 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 JAKMIP2Q96AA8 810 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 RNF41Q9H4P4 317 aaPredicted RBP15.21■□□□□ 0.03
USP42-206ENST00000479544 USP21Q9UK80 565 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 VWDEQ8N2E2 1590 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 ZNF274Q96GC6 653 aaPredicted RBP15.21■□□□□ 0.03
USP42-206ENST00000479544 ARMT1Q9H993 441 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 SUGCTQ9HAC7 445 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 PPANQ9NQ55 473 aaKnown RBP15.21■□□□□ 0.03
USP42-206ENST00000479544 EXOC1Q9NV70 894 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 SAR1BQ9Y6B6 198 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 ADGRB3O60242 1522 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 CCDC151A5D8V7 595 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 RILPL1Q5EBL4 403 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 TMTC1Q8IUR5 882 aa15.21■□□□□ 0.03
USP42-206ENST00000479544 FRMD3A2A2Y4 597 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 ZNF526Q8TF50 670 aaPredicted RBP15.2■□□□□ 0.02
USP42-206ENST00000479544 TRIM31Q9BZY9 425 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 MKRN1Q9UHC7 482 aaKnown RBP15.2■□□□□ 0.02
USP42-206ENST00000479544 WWC3Q9ULE0 1092 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 CDC25AP30304 524 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 CYP2C19P33261 490 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 POLA2Q14181 598 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 CASP8Q14790 479 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 ORAI2Q96SN7 254 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 NEURL4Q96JN8 1562 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 STARD3NLO95772 234 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 CALRP27797 417 aaKnown RBP15.2■□□□□ 0.02
USP42-206ENST00000479544 IGHMBP2P38935 993 aaKnown RBP15.2■□□□□ 0.02
USP42-206ENST00000479544 PIK3AP1Q6ZUJ8 805 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 PUS3Q9BZE2 481 aaKnown RBP15.2■□□□□ 0.02
USP42-206ENST00000479544 TMOD3Q9NYL9 352 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 CEP152O94986 1710 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 PHLPP2Q6ZVD8 1323 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 SLC39A14Q15043 492 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 BRINP3Q76B58 766 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 GSPT2Q8IYD1 628 aaKnown RBP15.2■□□□□ 0.02
USP42-206ENST00000479544 EXOC4Q96A65 974 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 FUCA2Q9BTY2 467 aa15.2■□□□□ 0.02
USP42-206ENST00000479544 A0A1W2PQ27 194 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 A0A1W2PQ64 194 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 A0A1W2PQD8 194 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 FOXN1O15353 648 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 C8orf74Q6P047 294 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 VSTM4Q8IW00 320 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 APPBP2Q92624 585 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 TMEM51Q9NW97 253 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 E9PCH4 1651 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 NR5A1Q13285 461 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 KLHL7Q8IXQ5 586 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 ATP10DQ9P241 1426 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 EPHA10Q5JZY3 1008 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 FMR1NBQ8N0W7 255 aaPredicted RBP15.19■□□□□ 0.02
USP42-206ENST00000479544 FAM207AQ9NSI2 230 aaPredicted RBP15.19■□□□□ 0.02
USP42-206ENST00000479544 BABAM1Q9NWV8 329 aa15.19■□□□□ 0.02
USP42-206ENST00000479544 SLC5A1P13866 664 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 CXCR5P32302 372 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 SELENOSQ9BQE4 189 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 TTF1Q15361 905 aaPredicted RBP15.18■□□□□ 0.02
USP42-206ENST00000479544 HEATR3Q7Z4Q2 680 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 CCDC43Q96MW1 224 aaKnown RBP15.18■□□□□ 0.02
USP42-206ENST00000479544 SPAG5Q96R06 1193 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 LMTK2Q8IWU2 1503 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 ARHGEF10O15013 1369 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 SRGAP2O75044 1071 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 HOXB7P09629 217 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 KIF23Q02241 960 aaPredicted RBP15.18■□□□□ 0.02
USP42-206ENST00000479544 PNMA8AQ86V59 439 aaPredicted RBP15.18■□□□□ 0.02
USP42-206ENST00000479544 ESR2Q92731 530 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 KRT23Q9C075 422 aa15.18■□□□□ 0.02
USP42-206ENST00000479544 ANKRD62A6NC57 917 aa15.17■□□□□ 0.02
USP42-206ENST00000479544 EIF3CLB5ME19 914 aaKnown RBP15.17■□□□□ 0.02
USP42-206ENST00000479544 TUBBP07437 444 aa15.17■□□□□ 0.02
USP42-206ENST00000479544 EZRP15311 586 aaKnown RBP15.17■□□□□ 0.02
USP42-206ENST00000479544 CSGALNACT2Q8N6G5 542 aa15.17■□□□□ 0.02
USP42-206ENST00000479544 EIF3CQ99613 913 aaKnown RBP15.17■□□□□ 0.02
USP42-206ENST00000479544 DSCC1Q9BVC3 393 aa15.17■□□□□ 0.02
USP42-206ENST00000479544 RMND1Q9NWS8 449 aa15.17■□□□□ 0.02
USP42-206ENST00000479544 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.17■□□□□ 0.02
USP42-206ENST00000479544 FEZ2Q9UHY8 353 aaPredicted RBP15.17■□□□□ 0.02
USP42-206ENST00000479544 TADA3O75528 432 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms