RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 KCNH4Q9UQ05 1017 aa16.98■□□□□ 0.31
BRCA1-211ENST00000472490 CCL15-CCL14A0A0B4J2E2 113 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 FOXN1O15353 648 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 TRPA1O75762 1119 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 SLC3A2P08195 630 aaKnown RBP16.97■□□□□ 0.31
BRCA1-211ENST00000472490 CCL15Q16663 113 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 FASTKD5Q7L8L6 764 aaKnown RBP16.97■□□□□ 0.31
BRCA1-211ENST00000472490 IFNL3Q8IZI9 196 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 FAM227BQ96M60 508 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 AFG3L2Q9Y4W6 797 aa16.97■□□□□ 0.31
BRCA1-211ENST00000472490 AK9Q5TCS8 1911 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 A0A0D9SFI3 127 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 GSPT1P15170 499 aaKnown RBP16.96■□□□□ 0.31
BRCA1-211ENST00000472490 NMIQ13287 307 aaPredicted RBP16.96■□□□□ 0.31
BRCA1-211ENST00000472490 ABCB5Q2M3G0 1257 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 ZNF280CQ8ND82 737 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 RUFY2Q8WXA3 655 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 CCDC17Q96LX7 622 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 ZCCHC17Q9NP64 241 aaKnown RBP16.96■□□□□ 0.31
BRCA1-211ENST00000472490 ZBTB21Q9ULJ3 1066 aa16.96■□□□□ 0.31
BRCA1-211ENST00000472490 FOCADQ5VW36 1801 aa16.96■□□□□ 0.3
BRCA1-211ENST00000472490 MINDY4BA8MYZ0 360 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 GDF11O95390 407 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 CYP2D6P10635 497 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 SHMT1P34896 483 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 SAMD1Q6SPF0 538 aaPredicted RBP16.95■□□□□ 0.3
BRCA1-211ENST00000472490 CWC27Q6UX04 472 aaKnown RBP16.95■□□□□ 0.3
BRCA1-211ENST00000472490 C16orf86Q6ZW13 317 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 BRI3BPQ8WY22 251 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 CCDC171Q6TFL3 1326 aa16.95■□□□□ 0.3
BRCA1-211ENST00000472490 MYH7P12883 1935 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 TRIM75PA6NK02 468 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 GH2P01242 217 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 RRP1BQ14684 758 aaKnown RBP16.94■□□□□ 0.3
BRCA1-211ENST00000472490 CCDC129Q6ZRS4 1044 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 WDR18Q9BV38 432 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 CFHR5Q9BXR6 569 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 MKNK2Q9HBH9 465 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 EPB41L4AQ9HCS5 686 aaPredicted RBP16.94■□□□□ 0.3
BRCA1-211ENST00000472490 OTOFQ9HC10 1997 aa16.94■□□□□ 0.3
BRCA1-211ENST00000472490 A0A0G2JLL6 359 aaPredicted RBP16.93■□□□□ 0.3
BRCA1-211ENST00000472490 IGF2BP3O00425 579 aaKnown RBP eCLIP16.93■□□□□ 0.3
BRCA1-211ENST00000472490 MPHOSPH10O00566 681 aaKnown RBP16.93■□□□□ 0.3
BRCA1-211ENST00000472490 HSPA8P11142 646 aaKnown RBP16.93■□□□□ 0.3
BRCA1-211ENST00000472490 CDK8P49336 464 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 SPP2Q13103 211 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 RAB3GAP1Q15042 981 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 TMEM179Q6ZVK1 233 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 PRRT2Q7Z6L0 340 aaPredicted RBP16.93■□□□□ 0.3
BRCA1-211ENST00000472490 DYNLL2Q96FJ2 89 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 PTPN18Q99952 460 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 PRDM10Q9NQV6 1147 aa16.93■□□□□ 0.3
BRCA1-211ENST00000472490 CYP2D7A0A087X1C5 515 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 C19orf81C9J6K1 198 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 HSPD1P10809 573 aaKnown RBP16.92■□□□□ 0.3
BRCA1-211ENST00000472490 LBX1P52954 281 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 PDE4BQ07343 736 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 ALX1Q15699 326 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 NOM1Q5C9Z4 860 aaKnown RBP16.92■□□□□ 0.3
BRCA1-211ENST00000472490 BMP2KLQ5H9B9 411 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 ANKRD23Q86SG2 305 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 PROCA1Q8NCQ7 364 aaPredicted RBP16.92■□□□□ 0.3
BRCA1-211ENST00000472490 ZFYVE28Q9HCC9 887 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 DDX60LQ5H9U9 1706 aaKnown RBP16.92■□□□□ 0.3
BRCA1-211ENST00000472490 RAD50Q92878 1312 aa16.92■□□□□ 0.3
BRCA1-211ENST00000472490 ROBO3Q96MS0 1386 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 NAV1Q8NEY1 1877 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 CDK5RAP2Q96SN8 1893 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 BTBD19C9JJ37 291 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 USP17L10C9JJH3 530 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 BACE1P56817 501 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 PPARAQ07869 468 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 VPS53Q5VIR6 699 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 ZNF589Q86UQ0 364 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-211ENST00000472490 SLC44A5Q8NCS7 719 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 TMOD4Q9NZQ9 345 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 SLC45A1Q9Y2W3 748 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 ZMYM6O95789 1325 aa16.91■□□□□ 0.3
BRCA1-211ENST00000472490 TBC1D8O95759 1140 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 USP14P54578 494 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 EVX2Q03828 476 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 PABPC4Q13310 644 aaKnown RBP eCLIP16.9■□□□□ 0.3
BRCA1-211ENST00000472490 TAF1CQ15572 869 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-211ENST00000472490 SH3D19Q5HYK7 790 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 GADL1Q6ZQY3 521 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 CCDC84Q86UT8 332 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-211ENST00000472490 ZNF444Q8N0Y2 327 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-211ENST00000472490 FAM43AQ8N2R8 423 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 FEZ1Q99689 392 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-211ENST00000472490 TSKSQ9UJT2 592 aa16.9■□□□□ 0.3
BRCA1-211ENST00000472490 PDHXO00330 501 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 FGAP02671 866 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 CHMLP26374 656 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 JAG1P78504 1218 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 MTMR2Q13614 643 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 CASC1Q6TDU7 716 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 PARK7Q99497 189 aaKnown RBP16.89■□□□□ 0.29
BRCA1-211ENST00000472490 DSCC1Q9BVC3 393 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 SH2D4AQ9H788 454 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms