RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CERKLQ49MI3 558 aaPredicted RBP14.25□□□□□ -0.13
VPS13D-204ENST00000469054 C16orf86Q6ZW13 317 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 DSCC1Q9BVC3 393 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 GINM1Q9NU53 330 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 ZHX2Q9Y6X8 837 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 GDF11O95390 407 aa14.24□□□□□ -0.13
VPS13D-204ENST00000469054 ASNSP08243 561 aa14.24□□□□□ -0.13
VPS13D-204ENST00000469054 PPARAQ07869 468 aa14.24□□□□□ -0.13
VPS13D-204ENST00000469054 PPIL2Q13356 520 aa14.24□□□□□ -0.13
VPS13D-204ENST00000469054 JMYQ8N9B5 988 aa14.24□□□□□ -0.13
VPS13D-204ENST00000469054 OTUD5Q96G74 571 aa14.24□□□□□ -0.13
VPS13D-204ENST00000469054 AK9Q5TCS8 1911 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 ZMYM6O95789 1325 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 FOCADQ5VW36 1801 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 IRF6O14896 467 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 CDC45O75419 566 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 SLC3A2P08195 630 aaKnown RBP14.23□□□□□ -0.13
VPS13D-204ENST00000469054 JAG1P78504 1218 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 ABCB5Q2M3G0 1257 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 CASC1Q6TDU7 716 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 REM2Q8IYK8 340 aaPredicted RBP14.23□□□□□ -0.13
VPS13D-204ENST00000469054 STK11IPQ8N1F8 1099 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 CCDC17Q96LX7 622 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 ZNF287Q9HBT7 754 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 CABP5Q9NP86 173 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.23□□□□□ -0.13
VPS13D-204ENST00000469054 ANAPC4Q9UJX5 808 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 ZBTB21Q9ULJ3 1066 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 CDK5RAP2Q96SN8 1893 aa14.23□□□□□ -0.13
VPS13D-204ENST00000469054 ROBO3Q96MS0 1386 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 MANSC4A6NHS7 340 aaPredicted RBP14.22□□□□□ -0.13
VPS13D-204ENST00000469054 USP17L5A8MUK1 530 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 CXCL11O14625 94 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 GH2P01242 217 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 GTF2A2P52657 109 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 INHBEP58166 350 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 PDE4BQ07343 736 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 SHROOM1Q2M3G4 852 aaPredicted RBP14.22□□□□□ -0.13
VPS13D-204ENST00000469054 CCDC84Q86UT8 332 aaPredicted RBP14.22□□□□□ -0.13
VPS13D-204ENST00000469054 MS4A4AQ96JQ5 239 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 ESYT1Q9BSJ8 1104 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 TBC1D2Q9BYX2 928 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 MKNK2Q9HBH9 465 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 KCNH4Q9UQ05 1017 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 AFG3L2Q9Y4W6 797 aa14.22□□□□□ -0.13
VPS13D-204ENST00000469054 DDX60LQ5H9U9 1706 aaKnown RBP14.21□□□□□ -0.13
VPS13D-204ENST00000469054 TESPA1A2RU30 521 aaPredicted RBP14.21□□□□□ -0.13
VPS13D-204ENST00000469054 AKR1B1P15121 316 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 TM4SF4P48230 202 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 MAP2K1Q02750 393 aaPredicted RBP14.21□□□□□ -0.13
VPS13D-204ENST00000469054 CTDSPL2Q05D32 466 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 SREBF2Q12772 1141 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 SNAPC2Q13487 334 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 AS3MTQ9HBK9 375 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 CTNNA3Q9UI47 895 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 GTF3C3Q9Y5Q9 886 aa14.21□□□□□ -0.13
VPS13D-204ENST00000469054 NAV1Q8NEY1 1877 aa14.21□□□□□ -0.14
VPS13D-204ENST00000469054 SIPA1L1O43166 1804 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 MYH1P12882 1939 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 MPHOSPH10O00566 681 aaKnown RBP14.2□□□□□ -0.14
VPS13D-204ENST00000469054 ZNF213O14771 459 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 PRDM1O75626 825 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 GUCY1A2P33402 732 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 HAND2P61296 217 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 PTH1RQ03431 593 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 RAB3GAP1Q15042 981 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 KIAA1211Q6ZU35 1233 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 TMEM179Q6ZVK1 233 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 ZNF444Q8N0Y2 327 aaPredicted RBP14.2□□□□□ -0.14
VPS13D-204ENST00000469054 ZNF280CQ8ND82 737 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 WDR18Q9BV38 432 aa14.2□□□□□ -0.14
VPS13D-204ENST00000469054 CCL15-CCL14A0A0B4J2E2 113 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 TRIM75PA6NK02 468 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 FGRP09769 529 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 CETPP11597 493 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 RASA1P20936 1047 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 SPP2Q13103 211 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 SEPT2Q15019 361 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 CCL15Q16663 113 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 IMMTQ16891 758 aaKnown RBP14.19□□□□□ -0.14
VPS13D-204ENST00000469054 BRI3BPQ8WY22 251 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 MAP4K1Q92918 833 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 WBP1LQ9NX94 342 aa14.19□□□□□ -0.14
VPS13D-204ENST00000469054 AKNAD1Q5T1N1 836 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 IFNL1Q8IU54 200 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 PTPN18Q99952 460 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 BEGAINQ9BUH8 593 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 LSG1Q9H089 658 aaKnown RBP14.18□□□□□ -0.14
VPS13D-204ENST00000469054 INCENPQ9NQS7 918 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.18□□□□□ -0.14
VPS13D-204ENST00000469054 TACC3Q9Y6A5 838 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 OTOFQ9HC10 1997 aa14.18□□□□□ -0.14
VPS13D-204ENST00000469054 BAZ2AQ9UIF9 1905 aaKnown RBP14.17□□□□□ -0.14
VPS13D-204ENST00000469054 A0A0G2JLL6 359 aaPredicted RBP14.17□□□□□ -0.14
VPS13D-204ENST00000469054 USP17L10C9JJH3 530 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 PCP11498 1178 aaKnown RBP14.17□□□□□ -0.14
VPS13D-204ENST00000469054 BACE1P56817 501 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 OTUD7BQ6GQQ9 843 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 MFSD6Q6ZSS7 791 aa14.17□□□□□ -0.14
VPS13D-204ENST00000469054 FASTKD5Q7L8L6 764 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms