RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 C1orf127Q8N9H9 656 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 SSBP4Q9BWG4 385 aaPredicted RBP10.07□□□□□ -0.8
USP54-208ENST00000461520 RTL1A6NKG5 1358 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 LINC01387J3KSC0 135 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 FYB1O15117 783 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 SMNDC1O75940 238 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP54-208ENST00000461520 ALX3O95076 343 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 RPLP1P05386 114 aaKnown RBP10.06□□□□□ -0.8
USP54-208ENST00000461520 PCSK2P16519 638 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 MZF1P28698 734 aaPredicted RBP10.06□□□□□ -0.8
USP54-208ENST00000461520 AAMPQ13685 434 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 TXNDC11Q6PKC3 985 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 LTV1Q96GA3 475 aaPredicted RBP10.06□□□□□ -0.8
USP54-208ENST00000461520 ACSBG1Q96GR2 724 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 PBX4Q9BYU1 374 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 ANO2Q9NQ90 1003 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 STK32BQ9NY57 414 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 POLIQ9UNA4 740 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 NHSQ6T4R5 1651 aa10.06□□□□□ -0.8
USP54-208ENST00000461520 FAM208AQ9UK61 1670 aaKnown RBP10.06□□□□□ -0.8
USP54-208ENST00000461520 FBLN1P23142 703 aa10.05□□□□□ -0.8
USP54-208ENST00000461520 SLC15A2Q16348 729 aa10.05□□□□□ -0.8
USP54-208ENST00000461520 PRSS36Q5K4E3 855 aa10.05□□□□□ -0.8
USP54-208ENST00000461520 XKR5Q6UX68 686 aa10.05□□□□□ -0.8
USP54-208ENST00000461520 TTC16Q8NEE8 873 aa10.05□□□□□ -0.8
USP54-208ENST00000461520 CHD4Q14839 1912 aa10.05□□□□□ -0.8
USP54-208ENST00000461520 ABL1P00519 1130 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 H2AFB1P0C5Y9 115 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 H2AFB2P0C5Z0 115 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 ACPPP15309 386 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 CDC27P30260 824 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 XP32Q5T750 250 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 Q8N3U1 123 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 GALNT11Q8NCW6 608 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 DDX54Q8TDD1 881 aaKnown RBP10.04□□□□□ -0.8
USP54-208ENST00000461520 MEGF10Q96KG7 1140 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 SH2B1Q9NRF2 756 aaPredicted RBP10.04□□□□□ -0.8
USP54-208ENST00000461520 SALL4Q9UJQ4 1053 aa10.04□□□□□ -0.8
USP54-208ENST00000461520 KAT6BQ8WYB5 2073 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 NPR3P17342 541 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 CES1P23141 567 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 RRS1Q15050 365 aaKnown RBP10.03□□□□□ -0.8
USP54-208ENST00000461520 ZMYM1Q5SVZ6 1142 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 ALKBH2Q6NS38 261 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 CACTIN-AS1Q8N1I8 211 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 POP1Q99575 1024 aaKnown RBP10.03□□□□□ -0.8
USP54-208ENST00000461520 ARID3AQ99856 593 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 SYT17Q9BSW7 474 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 PCGF6Q9BYE7 350 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 MUC3BQ9H195 1237 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 AKTIPQ9H8T0 292 aa10.03□□□□□ -0.8
USP54-208ENST00000461520 KIF24Q5T7B8 1368 aa10.02□□□□□ -0.8
USP54-208ENST00000461520 SMG6Q86US8 1419 aaKnown RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 TRPA1O75762 1119 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 FKBP4Q02790 459 aaKnown RBP eCLIP10.02□□□□□ -0.81
USP54-208ENST00000461520 ZNF211Q13398 564 aaPredicted RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 FOXD4L6Q3SYB3 417 aaPredicted RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 FOXD4L3Q6VB84 417 aaPredicted RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 MAP4K3Q8IVH8 894 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 ZCRB1Q8TBF4 217 aaKnown RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 MTFR1LQ9H019 292 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 MRPL18Q9H0U6 180 aaKnown RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 CHRDQ9H2X0 955 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 SRA1Q9HD15 236 aaKnown RBP10.02□□□□□ -0.81
USP54-208ENST00000461520 MTMR7Q9Y216 660 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 PAPPAQ13219 1627 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 BTAF1O14981 1849 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 CGNL1Q0VF96 1302 aa10.02□□□□□ -0.81
USP54-208ENST00000461520 INSRP06213 1382 aa10.01□□□□□ -0.81
USP54-208ENST00000461520 F8W735 103 aaPredicted RBP10.01□□□□□ -0.81
USP54-208ENST00000461520 FAM13AO94988 1023 aa10.01□□□□□ -0.81
USP54-208ENST00000461520 NBPF6Q5VWK0 638 aa10.01□□□□□ -0.81
USP54-208ENST00000461520 NBPF4Q96M43 638 aa10.01□□□□□ -0.81
USP54-208ENST00000461520 FLT4P35916 1363 aa10.01□□□□□ -0.81
USP54-208ENST00000461520 NSD3Q9BZ95 1437 aa10□□□□□ -0.81
USP54-208ENST00000461520 EPHA1P21709 976 aa10□□□□□ -0.81
USP54-208ENST00000461520 HSP90AB2PQ58FF8 381 aa10□□□□□ -0.81
USP54-208ENST00000461520 AGGF1Q8N302 714 aaeCLIP10□□□□□ -0.81
USP54-208ENST00000461520 TMEM130Q8N3G9 435 aa10□□□□□ -0.81
USP54-208ENST00000461520 RAPGEF4Q8WZA2 1011 aa10□□□□□ -0.81
USP54-208ENST00000461520 HHIPQ96QV1 700 aa10□□□□□ -0.81
USP54-208ENST00000461520 CCDC87Q9NVE4 849 aa10□□□□□ -0.81
USP54-208ENST00000461520 MEGF6O75095 1541 aa10□□□□□ -0.81
USP54-208ENST00000461520 FZD6O60353 706 aa9.99□□□□□ -0.81
USP54-208ENST00000461520 SYTL4Q96C24 671 aaPredicted RBP9.99□□□□□ -0.81
USP54-208ENST00000461520 KCNK4Q9NYG8 393 aa9.99□□□□□ -0.81
USP54-208ENST00000461520 KIF20BQ96Q89 1820 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 NFKBIEO00221 500 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 TM4SF5O14894 197 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 WISP1O95388 367 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 PTPRAP18433 802 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 USHBP1Q8N6Y0 703 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 ADAM19Q9H013 955 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 DZANK1Q9NVP4 752 aa9.98□□□□□ -0.81
USP54-208ENST00000461520 RGPD2P0DJD1 1756 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 FSCN2O14926 492 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 EREGO14944 169 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 TNFRSF21O75509 655 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 CD68P34810 354 aaPredicted RBP9.97□□□□□ -0.81
USP54-208ENST00000461520 ZNF827Q17R98 1081 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms