RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PRIM1P49642 420 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 P4HA1P13674 534 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 PPP2R5CQ13362 524 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 TNFAIP1Q13829 316 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 MAPK8IP1Q9UQF2 711 aa13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 POLR3AO14802 1390 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-207ENST00000436346 GIPC1O14908 333 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 VAV2P52735 878 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 HACE1Q8IYU2 909 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 EYA1Q99502 592 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 KIF22Q14807 665 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 KRT222Q8N1A0 295 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 REXO1Q8N1G1 1221 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 MRRFQ96E11 262 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 PALM3A6NDB9 673 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 AKR1B15C9JRZ8 316 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 PRPF6O94906 941 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 ATP5DP30049 168 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 NSMCE1Q8WV22 266 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 PAGR1Q9BTK6 254 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 SAMD15Q9P1V8 674 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 EFCAB6Q5THR3 1501 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 MNAT1P51948 309 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 MAPKAPK5Q8IW41 473 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 PIK3C2GO75747 1445 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 RPS6KB1P23443 525 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 ASIC2Q16515 512 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 VWA3BQ502W6 1294 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 DCUN1D2Q6PH85 259 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 KDM5DQ9BY66 1539 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 ARHGEF5Q12774 1597 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 NOL3O60936 208 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 RNASE9P60153 205 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 DAAM2Q86T65 1068 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 GABPB2Q8TAK5 448 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 TRPC6Q9Y210 931 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 PRDM1O75626 825 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 HPDP32754 393 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 FAM47CQ5HY64 1035 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 GLG1Q92896 1179 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 PRIMPOLQ96LW4 560 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 RAD50Q92878 1312 aa13.42□□□□□ -0.26
CCDC88A-207ENST00000436346 H7C1D1 291 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 CLUL1Q15846 466 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 NCOA5Q9HCD5 579 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 CFBP00751 764 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 UTP14CQ5TAP6 766 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 NSMFQ6X4W1 530 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 CPLX4Q7Z7G2 160 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 CCDC26Q8TAB7 109 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 PLEKHM2Q8IWE5 1019 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 PHKBQ93100 1093 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 AFAP1L2Q8N4X5 818 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 RSPH14Q9UHP6 348 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 GAS7O60861 476 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 CTSWP56202 376 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 PDE4DQ08499 809 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 RNF169Q8NCN4 708 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 RIOK1Q9BRS2 568 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 DNAJC5BQ9UF47 199 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 TSPYL6Q8N831 410 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 GPATCH11Q8N954 259 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 KLHDC4Q8TBB5 520 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 MED10Q9BTT4 135 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 CACYBPQ9HB71 228 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 NKIRAS1Q9NYS0 192 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 V9GYY5 206 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 MAP3K19Q56UN5 1328 aa13.41□□□□□ -0.26
CCDC88A-207ENST00000436346 IGSF22Q8N9C0 903 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 DNM3Q9UQ16 869 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 DKC1O60832 514 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 ERCC3P19447 782 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 CHMLP26374 656 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 TPH2Q8IWU9 490 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 CLASP1Q7Z460 1538 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 IVLP07476 585 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 TXKP42681 527 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 SETDB1Q15047 1291 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 PKNOX2Q96KN3 472 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 RILPL1Q5EBL4 403 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 BAG1Q99933 345 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 CIB2O75838 187 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 VPS52Q8N1B4 723 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 TEKT1Q969V4 418 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 NOC2LQ9Y3T9 749 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 FAM160A1Q05DH4 1040 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 SRGAP1Q7Z6B7 1085 aa13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 TCOF1Q13428 1488 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-207ENST00000436346 PLCB4Q15147 1175 aa13.4□□□□□ -0.27
CCDC88A-207ENST00000436346 DLGAP5Q15398 846 aa13.4□□□□□ -0.27
CCDC88A-207ENST00000436346 TTF2Q9UNY4 1162 aaKnown RBP13.4□□□□□ -0.27
CCDC88A-207ENST00000436346 FAM170AA1A519 330 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 SLC27A2O14975 620 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 DMP1Q13316 513 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 DPY19L2Q6NUT2 758 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 VPS18Q9P253 973 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 CCDC186Q7Z3E2 898 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 SWAP70Q9UH65 585 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms