RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SCAF8Q9UPN6 1271 aaKnown RBP11.89□□□□□ -0.51
CD44-207ENST00000425428 WDR19Q8NEZ3 1342 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 IFIT3O14879 490 aaKnown RBP11.88□□□□□ -0.51
CD44-207ENST00000425428 ASNSP08243 561 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 MCM2P49736 904 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 NEK4P51957 841 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 NFXL1Q6ZNB6 911 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 TMEM179Q6ZVK1 233 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
CD44-207ENST00000425428 PRC1O43663 620 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 CTNND1O60716 968 aaKnown RBP11.87□□□□□ -0.51
CD44-207ENST00000425428 FGRP09769 529 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 RPS6KB1P23443 525 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 FKBP1BP68106 108 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 GABPAQ06546 454 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 SH3BP5LQ7L8J4 393 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 METTL16Q86W50 562 aaKnown RBP11.87□□□□□ -0.51
CD44-207ENST00000425428 SH2D4AQ9H788 454 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 ZSWIM6Q9HCJ5 1215 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 TRPM7Q96QT4 1865 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 CCDC69A6NI79 296 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 TOMM70O94826 608 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 PRKG1Q13976 671 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 BECN1Q14457 450 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 WTAPQ15007 396 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 RAB3GAP1Q15042 981 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 TMEM67Q5HYA8 995 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 PRAMEF18Q5VWM3 479 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 TATDN1Q6P1N9 297 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 TEPSINQ96N21 525 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 WRNIP1Q96S55 665 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 TBC1D2Q9BYX2 928 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 KANSL2Q9H9L4 492 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 AS3MTQ9HBK9 375 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 ARHGEF10LQ9HCE6 1279 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 ZSWIM5Q9P217 1185 aa11.87□□□□□ -0.51
CD44-207ENST00000425428 NAP1L2Q9ULW6 460 aaPredicted RBP11.87□□□□□ -0.51
CD44-207ENST00000425428 ANGEL1Q9UNK9 670 aaKnown RBP11.87□□□□□ -0.51
CD44-207ENST00000425428 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.87□□□□□ -0.51
CD44-207ENST00000425428 NEDD4P46934 1319 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 RASA1P20936 1047 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 MAP3K9P80192 1104 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 ATP2B2Q01814 1243 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 FAM47AQ5JRC9 791 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 IFIT1BQ5T764 474 aaKnown RBP11.86□□□□□ -0.51
CD44-207ENST00000425428 SLC44A5Q8NCS7 719 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 NEDD1Q8NHV4 660 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 RBM46Q8TBY0 533 aaKnown RBP11.86□□□□□ -0.51
CD44-207ENST00000425428 TTC14Q96N46 770 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 ZSCAN10Q96SZ4 725 aaPredicted RBP11.86□□□□□ -0.51
CD44-207ENST00000425428 STX8Q9UNK0 236 aa11.86□□□□□ -0.51
CD44-207ENST00000425428 UNCXA6NJT0 531 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 FAM196BA6NMK8 535 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 CELF2O95319 508 aaKnown RBP11.85□□□□□ -0.51
CD44-207ENST00000425428 SHMT1P34896 483 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 CAP2P40123 477 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 MAP3K10Q02779 954 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 ADCK5Q3MIX3 580 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 HSCBQ8IWL3 235 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 ANKRD13AQ8IZ07 590 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 UPF3BQ9BZI7 483 aaKnown RBP11.85□□□□□ -0.51
CD44-207ENST00000425428 KAT14Q9H8E8 782 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 TCP11L1Q9NUJ3 509 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 ATAD5Q96QE3 1844 aa11.85□□□□□ -0.51
CD44-207ENST00000425428 GDF11O95390 407 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 TTLL1O95922 423 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 GH2P01242 217 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 POTEJP0CG39 1038 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 FSTL1Q12841 308 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 Q6ZUG5 572 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 STOX1Q6ZVD7 989 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 CATIPQ7Z7H3 387 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 DGKHQ86XP1 1220 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 MB21D2Q8IYB1 491 aaPredicted RBP11.84□□□□□ -0.51
CD44-207ENST00000425428 IL17RAQ96F46 866 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 FEZ1Q99689 392 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 NBPF3Q9H094 633 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 GBA2Q9HCG7 927 aaPredicted RBP11.84□□□□□ -0.51
CD44-207ENST00000425428 MYH4Q9Y623 1939 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 TNKSO95271 1327 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 SIPA1L1O43166 1804 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 HSP90AA1P07900 732 aaKnown RBP11.84□□□□□ -0.51
CD44-207ENST00000425428 CALM1P0DP23 149 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 CALM2P0DP24 149 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 CALM3P0DP25 149 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 ICA1Q05084 483 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 CHST3Q7LGC8 479 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 SCYL3Q8IZE3 742 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 ZNF784Q8NCA9 323 aaPredicted RBP11.84□□□□□ -0.51
CD44-207ENST00000425428 KLRG1Q96E93 195 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 INCENPQ9NQS7 918 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.84□□□□□ -0.51
CD44-207ENST00000425428 SLC12A7Q9Y666 1083 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 DOCK1Q14185 1865 aa11.84□□□□□ -0.51
CD44-207ENST00000425428 USP17L5A8MUK1 530 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 RAD21O60216 631 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 AKR1B1P15121 316 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 LIFRP42702 1097 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 CPLX2Q6PUV4 134 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms