RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 OTUD7BQ6GQQ9 843 aa27.56■■■□□ 2
SMARCB1-205ENST00000417137 CABP5Q9NP86 173 aa27.56■■■□□ 2
SMARCB1-205ENST00000417137 OTOFQ9HC10 1997 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 USP17L5A8MUK1 530 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 CXCL11O14625 94 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 SLC3A2P08195 630 aaKnown RBP27.55■■■□□ 2
SMARCB1-205ENST00000417137 CETPP11597 493 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 SHMT1P34896 483 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 ALX1Q15699 326 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 C16orf86Q6ZW13 317 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 ZNF589Q86UQ0 364 aaPredicted RBP27.55■■■□□ 2
SMARCB1-205ENST00000417137 SKAP1Q86WV1 359 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 DYNLL2Q96FJ2 89 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 AS3MTQ9HBK9 375 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 ZNF287Q9HBT7 754 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 THSD7BQ9C0I4 1608 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 NAV1Q8NEY1 1877 aa27.55■■■□□ 2
SMARCB1-205ENST00000417137 GDF11O95390 407 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 HSPD1P10809 573 aaKnown RBP27.54■■■□□ 2
SMARCB1-205ENST00000417137 CHMLP26374 656 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 CDK8P49336 464 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 ABCB5Q2M3G0 1257 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 VPS53Q5VIR6 699 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 MS4A4AQ96JQ5 239 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 KCNH4Q9UQ05 1017 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 AFG3L2Q9Y4W6 797 aa27.54■■■□□ 2
SMARCB1-205ENST00000417137 TESPA1A2RU30 521 aaPredicted RBP27.53■■■□□ 2
SMARCB1-205ENST00000417137 ALDH1A1P00352 501 aa27.53■■■□□ 2
SMARCB1-205ENST00000417137 EVX2Q03828 476 aa27.53■■■□□ 2
SMARCB1-205ENST00000417137 CCDC17Q96LX7 622 aa27.53■■■□□ 2
SMARCB1-205ENST00000417137 ZBTB21Q9ULJ3 1066 aa27.53■■■□□ 2
SMARCB1-205ENST00000417137 RAD50Q92878 1312 aa27.52■■■□□ 2
SMARCB1-205ENST00000417137 CCL15-CCL14A0A0B4J2E2 113 aa27.52■■■□□ 2
SMARCB1-205ENST00000417137 GH2P01242 217 aa27.52■■■□□ 2
SMARCB1-205ENST00000417137 CCL15Q16663 113 aa27.52■■■□□ 2
SMARCB1-205ENST00000417137 MKNK2Q9HBH9 465 aa27.52■■■□□ 2
SMARCB1-205ENST00000417137 DDX60LQ5H9U9 1706 aaKnown RBP27.52■■■□□ 2
SMARCB1-205ENST00000417137 SIPA1L1O43166 1804 aa27.51■■□□□ 1.99
SMARCB1-205ENST00000417137 IFNL1Q8IU54 200 aa27.51■■□□□ 1.99
SMARCB1-205ENST00000417137 SLC44A5Q8NCS7 719 aa27.51■■□□□ 1.99
SMARCB1-205ENST00000417137 ZNF280CQ8ND82 737 aa27.51■■□□□ 1.99
SMARCB1-205ENST00000417137 SAGE1Q9NXZ1 904 aa27.51■■□□□ 1.99
SMARCB1-205ENST00000417137 MPHOSPH10O00566 681 aaKnown RBP27.5■■□□□ 1.99
SMARCB1-205ENST00000417137 FOXP2O15409 715 aa27.5■■□□□ 1.99
SMARCB1-205ENST00000417137 FGAP02671 866 aa27.5■■□□□ 1.99
SMARCB1-205ENST00000417137 PPARAQ07869 468 aa27.5■■□□□ 1.99
SMARCB1-205ENST00000417137 WDR18Q9BV38 432 aa27.5■■□□□ 1.99
SMARCB1-205ENST00000417137 RNF186Q9NXI6 227 aa27.5■■□□□ 1.99
SMARCB1-205ENST00000417137 JAG1P78504 1218 aa27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 PDE4BQ07343 736 aa27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 SPP2Q13103 211 aa27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 RAB3GAP1Q15042 981 aa27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 FASTKD5Q7L8L6 764 aaKnown RBP27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 BRI3BPQ8WY22 251 aa27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.49■■□□□ 1.99
SMARCB1-205ENST00000417137 ROBO3Q96MS0 1386 aa27.48■■□□□ 1.99
SMARCB1-205ENST00000417137 ZMYM6O95789 1325 aa27.48■■□□□ 1.99
SMARCB1-205ENST00000417137 TRIM75PA6NK02 468 aa27.48■■□□□ 1.99
SMARCB1-205ENST00000417137 SMIM22K7EJ46 135 aa27.48■■□□□ 1.99
SMARCB1-205ENST00000417137 TRPA1O75762 1119 aa27.48■■□□□ 1.99
SMARCB1-205ENST00000417137 DSCC1Q9BVC3 393 aa27.48■■□□□ 1.99
SMARCB1-205ENST00000417137 BAZ2AQ9UIF9 1905 aaKnown RBP27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 LBX1P52954 281 aa27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 CASC1Q6TDU7 716 aa27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 TMEM179Q6ZVK1 233 aa27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 CCDC84Q86UT8 332 aaPredicted RBP27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 ZNF444Q8N0Y2 327 aaPredicted RBP27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 STK11IPQ8N1F8 1099 aa27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 PTPN18Q99952 460 aa27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 CTNNA3Q9UI47 895 aa27.47■■□□□ 1.99
SMARCB1-205ENST00000417137 A0A0G2JLL6 359 aaPredicted RBP27.46■■□□□ 1.99
SMARCB1-205ENST00000417137 PRRT2Q7Z6L0 340 aaPredicted RBP27.46■■□□□ 1.99
SMARCB1-205ENST00000417137 ZCCHC17Q9NP64 241 aaKnown RBP27.46■■□□□ 1.99
SMARCB1-205ENST00000417137 ANAPC4Q9UJX5 808 aa27.46■■□□□ 1.99
SMARCB1-205ENST00000417137 DOCK1Q14185 1865 aa27.46■■□□□ 1.99
SMARCB1-205ENST00000417137 C19orf81C9J6K1 198 aa27.45■■□□□ 1.98
SMARCB1-205ENST00000417137 IGF2BP3O00425 579 aaKnown RBP eCLIP27.45■■□□□ 1.98
SMARCB1-205ENST00000417137 SHROOM1Q2M3G4 852 aaPredicted RBP27.45■■□□□ 1.98
SMARCB1-205ENST00000417137 USP17L10C9JJH3 530 aa27.44■■□□□ 1.98
SMARCB1-205ENST00000417137 SGSM2O43147 1006 aa27.44■■□□□ 1.98
SMARCB1-205ENST00000417137 AKR1B1P15121 316 aa27.44■■□□□ 1.98
SMARCB1-205ENST00000417137 BACE1P56817 501 aa27.44■■□□□ 1.98
SMARCB1-205ENST00000417137 SEPT2Q15019 361 aa27.44■■□□□ 1.98
SMARCB1-205ENST00000417137 ANKRD23Q86SG2 305 aa27.44■■□□□ 1.98
SMARCB1-205ENST00000417137 BTBD19C9JJ37 291 aa27.43■■□□□ 1.98
SMARCB1-205ENST00000417137 RASA1P20936 1047 aa27.43■■□□□ 1.98
SMARCB1-205ENST00000417137 GADL1Q6ZQY3 521 aa27.43■■□□□ 1.98
SMARCB1-205ENST00000417137 TMOD4Q9NZQ9 345 aa27.43■■□□□ 1.98
SMARCB1-205ENST00000417137 ZNF213O14771 459 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 HSPA8P11142 646 aaKnown RBP27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 GUCY1A2P33402 732 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 CTDSPL2Q05D32 466 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 SH3D19Q5HYK7 790 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 KIAA1211Q6ZU35 1233 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 PROCA1Q8NCQ7 364 aaPredicted RBP27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 CFHR5Q9BXR6 569 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 KANSL2Q9H9L4 492 aa27.42■■□□□ 1.98
SMARCB1-205ENST00000417137 CDC45O75419 566 aa27.41■■□□□ 1.98
SMARCB1-205ENST00000417137 USP14P54578 494 aa27.41■■□□□ 1.98
SMARCB1-205ENST00000417137 MTMR2Q13614 643 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms