RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 WNT7AO00755 349 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 TOGARAM2Q6ZUX3 1019 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 CREBRFQ8IUR6 639 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 WASF1Q92558 559 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 NOL10Q9BSC4 688 aaKnown RBP23.59■■□□□ 1.37
CLK3-202ENST00000395066 VWA3AA6NCI4 1184 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 SART3Q15020 963 aaKnown RBP23.59■■□□□ 1.37
CLK3-202ENST00000395066 NOM1Q5C9Z4 860 aaKnown RBP23.59■■□□□ 1.37
CLK3-202ENST00000395066 SMARCE1Q969G3 411 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 NACAP1Q9BZK3 213 aa23.59■■□□□ 1.37
CLK3-202ENST00000395066 A0A087X0B3 334 aa23.58■■□□□ 1.37
CLK3-202ENST00000395066 DEXIO95424 95 aa23.58■■□□□ 1.37
CLK3-202ENST00000395066 CYP7A1P22680 504 aa23.58■■□□□ 1.37
CLK3-202ENST00000395066 PPARAQ07869 468 aa23.58■■□□□ 1.37
CLK3-202ENST00000395066 DESI2Q9BSY9 194 aa23.58■■□□□ 1.37
CLK3-202ENST00000395066 PPP2R2CQ9Y2T4 447 aa23.58■■□□□ 1.37
CLK3-202ENST00000395066 PNMA6AP0CW24 399 aaPredicted RBP23.58■■□□□ 1.36
CLK3-202ENST00000395066 IL6STP40189 918 aaPredicted RBP23.58■■□□□ 1.36
CLK3-202ENST00000395066 AFMP43652 599 aa23.58■■□□□ 1.36
CLK3-202ENST00000395066 RILPL1Q5EBL4 403 aa23.58■■□□□ 1.36
CLK3-202ENST00000395066 RGS22Q8NE09 1264 aa23.58■■□□□ 1.36
CLK3-202ENST00000395066 DHX58Q96C10 678 aa23.58■■□□□ 1.36
CLK3-202ENST00000395066 EPSTI1Q96J88 318 aa23.58■■□□□ 1.36
CLK3-202ENST00000395066 ERICH4A6NGS2 130 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 ERVV-1B6SEH8 477 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 EVX2Q03828 476 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 KLHL10Q6JEL2 608 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 UBXN4Q92575 508 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 UBAC1Q9BSL1 405 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 CARD6Q9BX69 1037 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 FOXP1Q9H334 677 aaPredicted RBP23.57■■□□□ 1.36
CLK3-202ENST00000395066 COL4A1P02462 1669 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 A0A0U1RQG5 324 aaPredicted RBP23.57■■□□□ 1.36
CLK3-202ENST00000395066 ACTN4O43707 911 aaKnown RBP23.57■■□□□ 1.36
CLK3-202ENST00000395066 COBLO75128 1261 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 STX17P56962 302 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 WDR24Q96S15 920 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 BAG1Q99933 345 aaPredicted RBP23.57■■□□□ 1.36
CLK3-202ENST00000395066 TNKSO95271 1327 aa23.57■■□□□ 1.36
CLK3-202ENST00000395066 MORC3Q14149 939 aa23.56■■□□□ 1.36
CLK3-202ENST00000395066 SMYD4Q8IYR2 804 aaPredicted RBP23.56■■□□□ 1.36
CLK3-202ENST00000395066 TC2NQ8N9U0 490 aa23.56■■□□□ 1.36
CLK3-202ENST00000395066 ARGLU1Q9NWB6 273 aaPredicted RBP23.56■■□□□ 1.36
CLK3-202ENST00000395066 DOCK2Q92608 1830 aa23.56■■□□□ 1.36
CLK3-202ENST00000395066 LRP5O75197 1615 aa23.56■■□□□ 1.36
CLK3-202ENST00000395066 GYG1P46976 350 aa23.56■■□□□ 1.36
CLK3-202ENST00000395066 MTF1Q14872 753 aa23.56■■□□□ 1.36
CLK3-202ENST00000395066 ZNF18P17022 549 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 SARSP49591 514 aaKnown RBP23.55■■□□□ 1.36
CLK3-202ENST00000395066 CHRNDQ07001 517 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 TBX2Q13207 712 aaPredicted RBP23.55■■□□□ 1.36
CLK3-202ENST00000395066 MNS1Q8NEH6 495 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 STAMQ92783 540 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 ACSBG1Q96GR2 724 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 PARP3Q9Y6F1 533 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 PLEKHA8P1O95397 391 aa23.55■■□□□ 1.36
CLK3-202ENST00000395066 SRPRBQ9Y5M8 271 aaKnown RBP23.55■■□□□ 1.36
CLK3-202ENST00000395066 BAZ2BQ9UIF8 2168 aaKnown RBP23.55■■□□□ 1.36
CLK3-202ENST00000395066 PLA2G4AP47712 749 aa23.54■■□□□ 1.36
CLK3-202ENST00000395066 TMCO3Q6UWJ1 677 aa23.54■■□□□ 1.36
CLK3-202ENST00000395066 SRRTQ9BXP5 876 aaKnown RBP23.54■■□□□ 1.36
CLK3-202ENST00000395066 RAI14Q9P0K7 980 aa23.54■■□□□ 1.36
CLK3-202ENST00000395066 HOOK1Q9UJC3 728 aaKnown RBP23.54■■□□□ 1.36
CLK3-202ENST00000395066 TIAM2Q8IVF5 1701 aa23.54■■□□□ 1.36
CLK3-202ENST00000395066 ZRANB2O95218 330 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLK3-202ENST00000395066 DYNLL1P63167 89 aaKnown RBP23.54■■□□□ 1.36
CLK3-202ENST00000395066 PNPLA7Q6ZV29 1317 aa23.54■■□□□ 1.36
CLK3-202ENST00000395066 ARAP2Q8WZ64 1704 aa23.54■■□□□ 1.36
CLK3-202ENST00000395066 ARHGAP6O43182 974 aa23.53■■□□□ 1.36
CLK3-202ENST00000395066 TEX33O43247 280 aa23.53■■□□□ 1.36
CLK3-202ENST00000395066 GNG11P61952 73 aa23.53■■□□□ 1.36
CLK3-202ENST00000395066 KARSQ15046 597 aaKnown RBP23.53■■□□□ 1.36
CLK3-202ENST00000395066 SPECC1LQ69YQ0 1117 aa23.53■■□□□ 1.36
CLK3-202ENST00000395066 INTS5Q6P9B9 1019 aaKnown RBP23.53■■□□□ 1.36
CLK3-202ENST00000395066 EXOC5O00471 708 aa23.53■■□□□ 1.36
CLK3-202ENST00000395066 CD44P16070 742 aaKnown RBP23.53■■□□□ 1.36
CLK3-202ENST00000395066 IGHMBP2P38935 993 aaKnown RBP23.53■■□□□ 1.36
CLK3-202ENST00000395066 EIF5P55010 431 aaKnown RBP23.53■■□□□ 1.36
CLK3-202ENST00000395066 NT5DC1Q5TFE4 455 aa23.53■■□□□ 1.36
CLK3-202ENST00000395066 IRX2Q9BZI1 471 aaPredicted RBP23.53■■□□□ 1.36
CLK3-202ENST00000395066 NID2Q14112 1375 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 A0A0U1RQJ8 604 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 TADA3O75528 432 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 SEC23AQ15436 765 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 PKN1Q16512 942 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 ENAHQ8N8S7 591 aaPredicted RBP23.52■■□□□ 1.36
CLK3-202ENST00000395066 MLKLQ8NB16 471 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 CPLX3Q8WVH0 158 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 ATRIPQ8WXE1 791 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 NIP7Q9Y221 180 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLK3-202ENST00000395066 GNAT2P19087 354 aa23.52■■□□□ 1.36
CLK3-202ENST00000395066 ENOX1Q8TC92 643 aaKnown RBP23.52■■□□□ 1.36
CLK3-202ENST00000395066 V9GY48 417 aaPredicted RBP23.52■■□□□ 1.36
CLK3-202ENST00000395066 MYH2Q9UKX2 1941 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 CYP2C19P33261 490 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 CRKLP46109 303 aaKnown RBP23.51■■□□□ 1.35
CLK3-202ENST00000395066 CALCOCO1Q9P1Z2 691 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 CCDC196A0A1B0GTZ2 297 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 ZSCAN12O43309 604 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 SEC31AO94979 1220 aaKnown RBP23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms