RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 A0A0G2JLL6 359 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CLRN2A0PK11 232 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CXCL11O14625 94 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 SLC27A2O14975 620 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CYP21A2P08686 494 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 JAG1P78504 1218 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 SEC23AQ15436 765 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 AKNAD1Q5T1N1 836 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 PRRT2Q7Z6L0 340 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-202ENST00000394943 TBC1D10CQ8IV04 446 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 FBXW7Q969H0 707 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 MS4A4AQ96JQ5 239 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CNNM2Q9H8M5 875 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 REC8O95072 547 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 C1QTNF8P60827 252 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CASC1Q6TDU7 716 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 CWC27Q6UX04 472 aaKnown RBP8.36□□□□□ -1.07
LIMA1-202ENST00000394943 MAPKAPK5Q8IW41 473 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 KIF2CQ99661 725 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 ZNF287Q9HBT7 754 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 ADAMTS5Q9UNA0 930 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 MYPNQ86TC9 1320 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 LCTP09848 1927 aa8.36□□□□□ -1.07
LIMA1-202ENST00000394943 COL11A1P12107 1806 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 TCP10L2B9ZVM9 353 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 USP17L12C9JPN9 530 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 USP17L21D6R901 530 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 IREB2P48200 963 aaKnown RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 MAP1SQ66K74 1059 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 TMEM179Q6ZVK1 233 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 ARMC9Q7Z3E5 817 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 TEX2Q8IWB9 1127 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 CSRNP1Q96S65 589 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 BACH2Q9BYV9 841 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 KIAA1683Q9H0B3 1180 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 RNF41Q9H4P4 317 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 PTPRAP18433 802 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 GJA5P36382 358 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 STOX1Q6ZVD7 989 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 SAGE1Q9NXZ1 904 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 CASP8AP2Q9UKL3 1982 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 HSPA6P17066 643 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 HOXA7P31268 230 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 USP5P45974 858 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 CREB3L3Q68CJ9 461 aa8.35□□□□□ -1.07
LIMA1-202ENST00000394943 PROCA1Q8NCQ7 364 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 RBM8AQ9Y5S9 174 aaKnown RBP8.35□□□□□ -1.07
LIMA1-202ENST00000394943 TRAF5O00463 557 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 CYP2D6P10635 497 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 SMARCA1P28370 1054 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 EVX2Q03828 476 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 SGMS1Q86VZ5 419 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 DGKHQ86XP1 1220 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 ERO1BQ86YB8 467 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 NKX2-3Q8TAU0 364 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 WNK4Q96J92 1243 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 ZSWIM6Q9HCJ5 1215 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 IL17RBQ9NRM6 502 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 ZBTB21Q9ULJ3 1066 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 TMX2Q9Y320 296 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 CACNB3P54284 484 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 INHBEP58166 350 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 KRT32Q14532 448 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 BTNL9Q6UXG8 535 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 KRT23Q9C075 422 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 MCM9Q9NXL9 1143 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 NEDD4P46934 1319 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 UTRNP46939 3433 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 C19orf81C9J6K1 198 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 NF2P35240 595 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 MAP2K2P36507 400 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 LIFRP42702 1097 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 RBM5P52756 815 aaKnown RBP eCLIP8.34□□□□□ -1.07
LIMA1-202ENST00000394943 GHRHRQ02643 423 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 VGLL4Q14135 290 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 SPRYD7Q5W111 196 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 GPAT2Q6NUI2 795 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 CCDC102AQ96A19 550 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 GMCL1Q96IK5 515 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 NAPBQ9H115 298 aa8.34□□□□□ -1.07
LIMA1-202ENST00000394943 E7EWF7 191 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 PPP1R12BO60237 982 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-202ENST00000394943 IGHA2P01877 340 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 ASNSP08243 561 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 HMGB1P09429 215 aaKnown RBP8.33□□□□□ -1.08
LIMA1-202ENST00000394943 ANTXR2P58335 489 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 IMMTQ16891 758 aaKnown RBP8.33□□□□□ -1.08
LIMA1-202ENST00000394943 ANKRD23Q86SG2 305 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 C2orf69Q8N8R5 385 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 IGDCC4Q8TDY8 1250 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.33□□□□□ -1.08
LIMA1-202ENST00000394943 SNX14Q9Y5W7 946 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 SLC3A2P08195 630 aaKnown RBP8.33□□□□□ -1.08
LIMA1-202ENST00000394943 EAPPQ56P03 285 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-202ENST00000394943 RGMBQ6NW40 437 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 MTMR8Q96EF0 704 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 DDRGK1Q96HY6 314 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 MTMR4Q9NYA4 1195 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 PDE4BQ07343 736 aa8.33□□□□□ -1.08
LIMA1-202ENST00000394943 SMIM22K7EJ46 135 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms