RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 DCAF5Q96JK2 942 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 STRCP1A6NGW2 1772 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 TMEM94Q12767 1356 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 CYP27B1O15528 508 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 SNRPA1P09661 255 aaKnown RBP8.69□□□□□ -1.02
CLCN3-202ENST00000360642 PAK2Q13177 524 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 MAP3K11Q16584 847 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 ADCK5Q3MIX3 580 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 EPHA10Q5JZY3 1008 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 DDX17Q92841 729 aaKnown RBP8.69□□□□□ -1.02
CLCN3-202ENST00000360642 COL26A1Q96A83 441 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 TRIM44Q96DX7 344 aaPredicted RBP8.69□□□□□ -1.02
CLCN3-202ENST00000360642 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.69□□□□□ -1.02
CLCN3-202ENST00000360642 KANSL2Q9H9L4 492 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 GLI3P10071 1580 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 HIP1O00291 1037 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 MYL6BP14649 208 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 ATF3P18847 181 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 CASTP20810 708 aaKnown RBP8.69□□□□□ -1.02
CLCN3-202ENST00000360642 NEXNQ0ZGT2 675 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 MAP4K1Q92918 833 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 PDLIM2Q96JY6 352 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 TLR7Q9NYK1 1049 aaKnown RBP8.69□□□□□ -1.02
CLCN3-202ENST00000360642 USP16Q9Y5T5 823 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 CCDC171Q6TFL3 1326 aa8.69□□□□□ -1.02
CLCN3-202ENST00000360642 RFX5P48382 616 aaPredicted RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 MYD88Q99836 296 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 KRTAP3-3Q9BYR6 98 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 KRTAP3-2Q9BYR7 98 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 CCDC8Q9H0W5 538 aaPredicted RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 ZFAND3Q9H8U3 227 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 TNS3Q68CZ2 1445 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 SYCE3A1L190 88 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 MINDY4BA8MYZ0 360 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 CPA1P15085 419 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 FOXD4L6Q3SYB3 417 aaPredicted RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 RABL6Q3YEC7 729 aaPredicted RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 PRPF40BQ6NWY9 871 aaKnown RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 FOXD4L3Q6VB84 417 aaPredicted RBP8.68□□□□□ -1.02
CLCN3-202ENST00000360642 FAM227BQ96M60 508 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 SLC4A9Q96Q91 983 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 LATS2Q9NRM7 1088 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 KBTBD4Q9NVX7 518 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 CPDO75976 1380 aa8.68□□□□□ -1.02
CLCN3-202ENST00000360642 LARGE1O95461 756 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 ZSCAN22P10073 491 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 ARID5AQ03989 594 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 NMIQ13287 307 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 KLHDC4Q8TBB5 520 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 ANP32BQ92688 251 aaKnown RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 CSRNP1Q96S65 589 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 IL21Q9HBE4 155 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 JCADQ9P266 1359 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 SYT1P21579 422 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 COL19A1Q14993 1142 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 CREB3L3Q68CJ9 461 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 ZNF295-AS1Q8N0V1 137 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 ZSCAN31Q96LW9 406 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 JAKMIP1Q96N16 626 aaKnown RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 FMNL2Q96PY5 1086 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 PDRG1Q9NUG6 133 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 RBM8AQ9Y5S9 174 aaKnown RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 PARP4Q9UKK3 1724 aaKnown RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 MED23Q9ULK4 1368 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 STX6O43752 255 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 GADD45BO75293 160 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 PLA2G4AP47712 749 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 CASP7P55210 303 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 PTPN12Q05209 780 aaKnown RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 ST3GAL1Q11201 340 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 HS1BP3Q53T59 392 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 SIL1Q9H173 461 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 SH2B1Q9NRF2 756 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-202ENST00000360642 CYP46A1Q9Y6A2 500 aa8.67□□□□□ -1.02
CLCN3-202ENST00000360642 SPATA31A3Q5VYP0 1347 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 MRGPRX2Q96LB1 330 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 BOLA2Q9H3K6 86 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 ARFGEF2Q9Y6D5 1785 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 A0A0D9SFI3 127 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 USP17L7P0C7H9 530 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 TTC5Q8N0Z6 440 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 ALDH8A1Q9H2A2 487 aaPredicted RBP8.66□□□□□ -1.02
CLCN3-202ENST00000360642 SMC3Q9UQE7 1217 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 LAMB4A4D0S4 1761 aa8.66□□□□□ -1.02
CLCN3-202ENST00000360642 SLC27A2O14975 620 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 TRPA1O75762 1119 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 F13A1P00488 732 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 ZKSCAN1P17029 563 aaPredicted RBP8.65□□□□□ -1.02
CLCN3-202ENST00000360642 CHRNA2Q15822 529 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 ME3Q16798 604 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 TCHHQ07283 1943 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 ATP5JP18859 108 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 VARSP26640 1264 aaKnown RBP8.65□□□□□ -1.02
CLCN3-202ENST00000360642 PIP4K2AP48426 406 aaPredicted RBP8.65□□□□□ -1.02
CLCN3-202ENST00000360642 MTFR1Q15390 333 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 CCDC81Q6ZN84 652 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 HS2ST1Q7LGA3 356 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 ZSCAN30Q86W11 494 aa8.65□□□□□ -1.02
CLCN3-202ENST00000360642 SYAP1Q96A49 352 aaPredicted RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms