RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 DACT2Q5SW24 774 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 MICALL2Q8IY33 904 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 FMR1NBQ8N0W7 255 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 FAM84BQ96KN1 310 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 GMLQ99445 158 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 MXD3Q9BW11 206 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 UBXN6Q9BZV1 441 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 GOLPH3LQ9H4A5 285 aa11.91□□□□□ -0.5
UPF3B-201ENST00000276201 CNOT7Q9UIV1 285 aaKnown RBP11.91□□□□□ -0.5
UPF3B-201ENST00000276201 ARID5BQ14865 1188 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 STRIP1Q5VSL9 837 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 E4F1Q66K89 784 aaPredicted RBP11.9□□□□□ -0.5
UPF3B-201ENST00000276201 LDHDQ86WU2 507 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 SMC1BQ8NDV3 1235 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 ZNF592Q92610 1267 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 PPP1R13BQ96KQ4 1090 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 ADARB2Q9NS39 739 aaKnown RBP11.9□□□□□ -0.5
UPF3B-201ENST00000276201 RTEL1Q9NZ71 1219 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 CEP126Q9P2H0 1117 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.9□□□□□ -0.51e-6■■■■□ 19.8
UPF3B-201ENST00000276201 FHOD1Q9Y613 1164 aa11.9□□□□□ -0.5
UPF3B-201ENST00000276201 HIBADHP31937 336 aaKnown RBP11.9□□□□□ -0.51
UPF3B-201ENST00000276201 FSTL1Q12841 308 aa11.9□□□□□ -0.51
UPF3B-201ENST00000276201 COL9A3Q14050 684 aaPredicted RBP11.9□□□□□ -0.51
UPF3B-201ENST00000276201 ADALQ6DHV7 355 aa11.9□□□□□ -0.51
UPF3B-201ENST00000276201 Q6ZUG5 572 aa11.9□□□□□ -0.51
UPF3B-201ENST00000276201 FBXO33Q7Z6M2 555 aa11.9□□□□□ -0.51
UPF3B-201ENST00000276201 ZNF589Q86UQ0 364 aaPredicted RBP11.9□□□□□ -0.51
UPF3B-201ENST00000276201 PNMA8AQ86V59 439 aaPredicted RBP11.9□□□□□ -0.51
UPF3B-201ENST00000276201 FBXW7Q969H0 707 aa11.9□□□□□ -0.51
UPF3B-201ENST00000276201 IKBKBO14920 756 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 GTF2IP78347 998 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 SCRN1Q12765 414 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 CHADLQ6NUI6 762 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 USP50Q70EL3 339 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 AGBL3Q8NEM8 1001 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 TRPM4Q8TD43 1214 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 LPIN2Q92539 896 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 MRPS27Q92552 414 aaKnown RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 NOL10Q9BSC4 688 aaKnown RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 ARGLU1Q9NWB6 273 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 IFIT1P09914 478 aaKnown RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 SLC5A1P13866 664 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 EVCP57679 992 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 TPM4P67936 248 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 EXOSC10Q01780 885 aaKnown RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 TFCP2Q12800 502 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 TTLL5Q6EMB2 1281 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 DHX32Q7L7V1 743 aaKnown RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 ZNF274Q96GC6 653 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-201ENST00000276201 TAF6LQ9Y6J9 622 aa11.89□□□□□ -0.51
UPF3B-201ENST00000276201 ARAP2Q8WZ64 1704 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 H7C1D1 291 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 IGSF3O75054 1194 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 YEATS4O95619 227 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 EGFRP00533 1210 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 BCAMP50895 628 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 HIRAP54198 1017 aaPredicted RBP11.88□□□□□ -0.51
UPF3B-201ENST00000276201 ETF1P62495 437 aaKnown RBP11.88□□□□□ -0.51
UPF3B-201ENST00000276201 MUM1L1Q5H9M0 696 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 AOPEPQ8N6M6 819 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 FSIP1Q8NA03 581 aa11.88□□□□□ -0.51
UPF3B-201ENST00000276201 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.88□□□□□ -0.51
UPF3B-201ENST00000276201 CTDNEP1O95476 244 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 PNMA6AP0CW24 399 aaPredicted RBP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 NLRP12P59046 1061 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 ZNF280AP59817 542 aaPredicted RBP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 MCMDC2Q4G0Z9 681 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 SAMD7Q7Z3H4 446 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 CERS5Q8N5B7 392 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 USP28Q96RU2 1077 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 DSCC1Q9BVC3 393 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 TMX1Q9H3N1 280 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 KIAA1468Q9P260 1216 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 JAG2Q9Y219 1238 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 CLEC11AQ9Y240 323 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 SFPQP23246 707 aaKnown RBP eCLIP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 CLCN6P51797 869 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 STK3Q13188 491 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 TBC1D10BQ4KMP7 808 aaPredicted RBP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 CAVIN4Q5BKX8 364 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 ARMCX5Q6P1M9 558 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 KCNG4Q8TDN1 519 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 DNAJC2Q99543 621 aaKnown RBP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 BOLA2Q9H3K6 86 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 ORC3Q9UBD5 711 aaPredicted RBP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 DNAI1Q9UI46 699 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 IQSEC3Q9UPP2 1182 aaPredicted RBP11.87□□□□□ -0.51
UPF3B-201ENST00000276201 NEDD4P46934 1319 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 FAM205AQ6ZU69 1335 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 MYO3BQ8WXR4 1341 aa11.87□□□□□ -0.51
UPF3B-201ENST00000276201 USP17L8P0C7I0 530 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 ADORA1P30542 326 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 PLA2G4AP47712 749 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 TEX35Q5T0J7 233 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 MAP1SQ66K74 1059 aaPredicted RBP11.86□□□□□ -0.51
UPF3B-201ENST00000276201 VPS37DQ86XT2 251 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 TCEANC2Q96MN5 208 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 HAUS7Q99871 368 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms