RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.86■■□□□ 1.256e-7■□□□□ 10.6
SQSTM1-216ENST00000626660 HERC5Q9UII4 1024 aaKnown RBP22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 FZD1Q9UP38 647 aa22.86■■□□□ 1.25
SQSTM1-216ENST00000626660 TBC1D12O60347 775 aa22.85■■□□□ 1.25
SQSTM1-216ENST00000626660 CASC1Q6TDU7 716 aa22.85■■□□□ 1.25
SQSTM1-216ENST00000626660 ZNF589Q86UQ0 364 aaPredicted RBP22.85■■□□□ 1.25
SQSTM1-216ENST00000626660 ARPP21Q9UBL0 812 aaPredicted RBP22.85■■□□□ 1.25
SQSTM1-216ENST00000626660 IFNL3Q8IZI9 196 aa22.84■■□□□ 1.25
SQSTM1-216ENST00000626660 WRNIP1Q96S55 665 aa22.84■■□□□ 1.25
SQSTM1-216ENST00000626660 NAPBQ9H115 298 aa22.84■■□□□ 1.25
SQSTM1-216ENST00000626660 EHD4Q9H223 541 aa22.84■■□□□ 1.25
SQSTM1-216ENST00000626660 SIPA1L1O43166 1804 aa22.84■■□□□ 1.25
SQSTM1-216ENST00000626660 UNCXA6NJT0 531 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 USP17L12C9JPN9 530 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 USP17L21D6R901 530 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 CDC45O75419 566 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 MAP3K9P80192 1104 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 MAP3K10Q02779 954 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 LDLRAD1Q5T700 205 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 PAXIP1Q6ZW49 1069 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 ANKRD13AQ8IZ07 590 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 HHIPL1Q96JK4 782 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 EPB41L4AQ9HCS5 686 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 SERPINB13Q9UIV8 391 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 CSADQ9Y600 493 aa22.83■■□□□ 1.25
SQSTM1-216ENST00000626660 OTOFQ9HC10 1997 aa22.83■■□□□ 1.24
SQSTM1-216ENST00000626660 DEFB115Q30KQ5 88 aa22.82■■□□□ 1.24
SQSTM1-216ENST00000626660 CTR9Q6PD62 1173 aa22.82■■□□□ 1.24
SQSTM1-216ENST00000626660 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.82■■□□□ 1.24
SQSTM1-216ENST00000626660 RASSF10A6NK89 507 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 FAM196BA6NMK8 535 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 CYP2D6P10635 497 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 HSPD1P10809 573 aaKnown RBP22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 PLCD1P51178 756 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 SBK1Q52WX2 424 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 C12orf60Q5U649 245 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 VPS53Q5VIR6 699 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 RGMBQ6NW40 437 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 ZNF112Q9UJU3 913 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 TAOK2Q9UL54 1235 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 LAMB1P07942 1786 aa22.81■■□□□ 1.24
SQSTM1-216ENST00000626660 MINDY4BA8MYZ0 360 aa22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 ZNF157P51786 506 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 ALX1Q15699 326 aa22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 METTL16Q86W50 562 aaKnown RBP22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 SLC10A4Q96EP9 437 aa22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 MYH8P13535 1937 aa22.8■■□□□ 1.24
SQSTM1-216ENST00000626660 PCNTO95613 3336 aa22.79■■□□□ 1.24
SQSTM1-216ENST00000626660 CYP2D7A0A087X1C5 515 aa22.79■■□□□ 1.24
SQSTM1-216ENST00000626660 SGSM2O43147 1006 aa22.79■■□□□ 1.24
SQSTM1-216ENST00000626660 SWAP70Q9UH65 585 aa22.79■■□□□ 1.24
SQSTM1-216ENST00000626660 ZMYM6O95789 1325 aa22.79■■□□□ 1.24
SQSTM1-216ENST00000626660 PHF20L1A8MW92 1017 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 FOXP2O15409 715 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 SLURP2P0DP57 97 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 INPP5BP32019 993 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 ECE1P42892 770 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 VGLL4Q14135 290 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 CCDC102AQ96A19 550 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 CLMNQ96JQ2 1002 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 ESYT1Q9BSJ8 1104 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 DSCC1Q9BVC3 393 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 DNAJC18Q9H819 358 aa22.78■■□□□ 1.24
SQSTM1-216ENST00000626660 CTNND1O60716 968 aaKnown RBP22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 SLC3A2P08195 630 aaKnown RBP22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 KIAA1211Q6ZU35 1233 aa22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 ZKSCAN4Q969J2 545 aaPredicted RBP22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 IL25Q9H293 177 aa22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 PICK1Q9NRD5 415 aa22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 DOCK1Q14185 1865 aa22.77■■□□□ 1.24
SQSTM1-216ENST00000626660 FGAP02671 866 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 EVX2Q03828 476 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 GABPAQ06546 454 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 GRM1Q13255 1194 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 NOL9Q5SY16 702 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 DYNLL2Q96FJ2 89 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 CAPNS2Q96L46 248 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 ELP3Q9H9T3 547 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 ROBO3Q96MS0 1386 aa22.76■■□□□ 1.23
SQSTM1-216ENST00000626660 ATAD5Q96QE3 1844 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 PPARAQ07869 468 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 CYP4F22Q6NT55 531 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 C16orf86Q6ZW13 317 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 SCYL3Q8IZE3 742 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 ZNF287Q9HBT7 754 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 CTNNA3Q9UI47 895 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 SNCAIPQ9Y6H5 919 aa22.75■■□□□ 1.23
SQSTM1-216ENST00000626660 CAP2P40123 477 aa22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 CDK8P49336 464 aa22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 CERKLQ49MI3 558 aaPredicted RBP22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 TATDN1Q6P1N9 297 aa22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 ERO1BQ86YB8 467 aa22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 RASAL3Q86YV0 1011 aa22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 GINM1Q9NU53 330 aa22.74■■□□□ 1.23
SQSTM1-216ENST00000626660 SLC10A3P09131 477 aa22.73■■□□□ 1.23
SQSTM1-216ENST00000626660 SHMT1P34896 483 aa22.73■■□□□ 1.23
SQSTM1-216ENST00000626660 SLC44A5Q8NCS7 719 aa22.73■■□□□ 1.23
SQSTM1-216ENST00000626660 MKNK2Q9HBH9 465 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms