RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ERICH6Q7L0X2 663 aa18.2■□□□□ 0.5
PNKP-218ENST00000625299 ANKLE1Q8NAG6 615 aa18.2■□□□□ 0.5
PNKP-218ENST00000625299 ZNF280CQ8ND82 737 aa18.2■□□□□ 0.5
PNKP-218ENST00000625299 GDF15Q99988 308 aa18.2■□□□□ 0.5
PNKP-218ENST00000625299 NBPF3Q9H094 633 aa18.2■□□□□ 0.5
PNKP-218ENST00000625299 A0A0C4DFX4 3053 aa18.19■□□□□ 0.5
PNKP-218ENST00000625299 E9PSI1 815 aa18.19■□□□□ 0.5
PNKP-218ENST00000625299 DEFB123Q8N688 67 aa18.19■□□□□ 0.5
PNKP-218ENST00000625299 FAM163AQ96GL9 167 aaPredicted RBP18.19■□□□□ 0.5
PNKP-218ENST00000625299 OSBPL5Q9H0X9 879 aaPredicted RBP18.19■□□□□ 0.5
PNKP-218ENST00000625299 C11orf49Q9H6J7 331 aa18.19■□□□□ 0.5
PNKP-218ENST00000625299 RPTORQ8N122 1335 aa18.19■□□□□ 0.5
PNKP-218ENST00000625299 GPR75-ASB3A0A0A6YYF3 556 aa18.18■□□□□ 0.5
PNKP-218ENST00000625299 A0A1B0GUL7 405 aa18.18■□□□□ 0.5
PNKP-218ENST00000625299 TBC1D12O60347 775 aa18.18■□□□□ 0.5
PNKP-218ENST00000625299 BMP8BP34820 402 aa18.18■□□□□ 0.5
PNKP-218ENST00000625299 RHBDL3P58872 404 aa18.18■□□□□ 0.5
PNKP-218ENST00000625299 Q7L0L9 218 aa18.18■□□□□ 0.5
PNKP-218ENST00000625299 ASCC2Q9H1I8 757 aaPredicted RBP18.18■□□□□ 0.5
PNKP-218ENST00000625299 PDS5AQ29RF7 1337 aaKnown RBP18.18■□□□□ 0.5
PNKP-218ENST00000625299 PLXNB2O15031 1838 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 CYP2B6P20813 491 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 MAGEA10P43363 369 aaPredicted RBP18.17■□□□□ 0.5
PNKP-218ENST00000625299 MVPQ14764 893 aaKnown RBP18.17■□□□□ 0.5
PNKP-218ENST00000625299 ALDH1L2Q3SY69 923 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 TRIB2Q92519 343 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 XAGE2Q96GT9 111 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 COPRSQ9NQ92 184 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 GJD2Q9UKL4 321 aa18.17■□□□□ 0.5
PNKP-218ENST00000625299 USP17L5A8MUK1 530 aa18.16■□□□□ 0.5
PNKP-218ENST00000625299 IRX3P78415 501 aaPredicted RBP18.16■□□□□ 0.5
PNKP-218ENST00000625299 TFCP2Q12800 502 aa18.16■□□□□ 0.5
PNKP-218ENST00000625299 ZNF384Q8TF68 577 aa18.16■□□□□ 0.5
PNKP-218ENST00000625299 NEUROD6Q96NK8 337 aa18.16■□□□□ 0.5
PNKP-218ENST00000625299 AS3MTQ9HBK9 375 aa18.16■□□□□ 0.5
PNKP-218ENST00000625299 RAI14Q9P0K7 980 aa18.16■□□□□ 0.5
PNKP-218ENST00000625299 CUL9Q8IWT3 2517 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 PEX10O60683 326 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 PRKAR2AP13861 404 aaKnown RBP18.15■□□□□ 0.5
PNKP-218ENST00000625299 CAP2P40123 477 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 GSTO1P78417 241 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 MTMR2Q13614 643 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 RRP1BQ14684 758 aaKnown RBP18.15■□□□□ 0.5
PNKP-218ENST00000625299 PI16Q6UXB8 463 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 TBC1D9Q6ZT07 1266 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 TEX11Q8IYF3 940 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 TBC1D2Q9BYX2 928 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 UBE2OQ9C0C9 1292 aaKnown RBP18.15■□□□□ 0.5
PNKP-218ENST00000625299 NOB1Q9ULX3 412 aaKnown RBP18.15■□□□□ 0.5
PNKP-218ENST00000625299 HDAC5Q9UQL6 1122 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 AKAP2Q9Y2D5 859 aa18.15■□□□□ 0.5
PNKP-218ENST00000625299 ZBTB22O15209 634 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 NPM3O75607 178 aaKnown RBP18.14■□□□□ 0.49
PNKP-218ENST00000625299 LDHCP07864 332 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 MNX1P50219 401 aaPredicted RBP18.14■□□□□ 0.49
PNKP-218ENST00000625299 GORABQ5T7V8 394 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 TDHQ8IZJ6 230 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 MEIS3Q99687 375 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 HMG20BQ9P0W2 317 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 OGDHLQ9ULD0 1010 aa18.14■□□□□ 0.49
PNKP-218ENST00000625299 COL2A1P02458 1487 aaPredicted RBP18.14■□□□□ 0.49
PNKP-218ENST00000625299 SLFN5Q08AF3 891 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 SH3D19Q5HYK7 790 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 GPR153Q6NV75 609 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 SPATA5Q8NB90 893 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 NSUN4Q96CB9 384 aaKnown RBP18.13■□□□□ 0.49
PNKP-218ENST00000625299 NUDT12Q9BQG2 462 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 TMOD4Q9NZQ9 345 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 MORF4L1Q9UBU8 362 aa18.13■□□□□ 0.49
PNKP-218ENST00000625299 SRGAP3O43295 1099 aa18.12■□□□□ 0.49
PNKP-218ENST00000625299 ZKSCAN1P17029 563 aaPredicted RBP18.12■□□□□ 0.49
PNKP-218ENST00000625299 PDE3AQ14432 1141 aa18.12■□□□□ 0.49
PNKP-218ENST00000625299 LRIT3Q3SXY7 679 aa18.12■□□□□ 0.49
PNKP-218ENST00000625299 SH3RF3Q8TEJ3 882 aaPredicted RBP18.12■□□□□ 0.49
PNKP-218ENST00000625299 P2RX7Q99572 595 aaKnown RBP18.12■□□□□ 0.49
PNKP-218ENST00000625299 NOL10Q9BSC4 688 aaKnown RBP18.12■□□□□ 0.49
PNKP-218ENST00000625299 API5Q9BZZ5 524 aaKnown RBP18.12■□□□□ 0.49
PNKP-218ENST00000625299 HERC5Q9UII4 1024 aaKnown RBP18.12■□□□□ 0.49
PNKP-218ENST00000625299 STXBP5LQ9Y2K9 1186 aa18.12■□□□□ 0.49
PNKP-218ENST00000625299 PFASO15067 1338 aa18.12■□□□□ 0.49
PNKP-218ENST00000625299 CCAR1Q8IX12 1150 aaKnown RBP18.11■□□□□ 0.49
PNKP-218ENST00000625299 GPRC5AQ8NFJ5 357 aa18.11■□□□□ 0.49
PNKP-218ENST00000625299 SOCS4Q8WXH5 440 aa18.11■□□□□ 0.49
PNKP-218ENST00000625299 CDCA7LQ96GN5 454 aa18.11■□□□□ 0.49
PNKP-218ENST00000625299 LRP2BPQ9P2M1 347 aa18.11■□□□□ 0.49
PNKP-218ENST00000625299 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.11■□□□□ 0.49
PNKP-218ENST00000625299 SIPA1L1O43166 1804 aa18.11■□□□□ 0.49
PNKP-218ENST00000625299 MAP4K4O95819 1239 aaPredicted RBP18.1■□□□□ 0.49
PNKP-218ENST00000625299 BACE1P56817 501 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 HERVK_113P62684 666 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 MAP3K21Q5TCX8 1036 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 PAGR1Q9BTK6 254 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 TRIM34Q9BYJ4 488 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 CWC22Q9HCG8 908 aaKnown RBP18.1■□□□□ 0.49
PNKP-218ENST00000625299 TXNRD2Q9NNW7 524 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 MTMR10Q9NXD2 777 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 PI4KBQ9UBF8 816 aa18.1■□□□□ 0.49
PNKP-218ENST00000625299 GDF11O95390 407 aa18.09■□□□□ 0.49
PNKP-218ENST00000625299 ASNSP08243 561 aa18.09■□□□□ 0.49
PNKP-218ENST00000625299 CCND3P30281 292 aaPredicted RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms