RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 ZBTB47Q9UFB7 747 aaPredicted RBP13.32□□□□□ -0.28
LIG3-214ENST00000592244 FLT1P17948 1338 aa13.32□□□□□ -0.28
LIG3-214ENST00000592244 A0A0G2JLL6 359 aaPredicted RBP13.31□□□□□ -0.28
LIG3-214ENST00000592244 GOLIM4O00461 696 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 ASNSP08243 561 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 ATP5JP18859 108 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 PABPC4Q13310 644 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIG3-214ENST00000592244 ZSCAN25Q6NSZ9 544 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 OTOP1Q7RTM1 612 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 PRRT2Q7Z6L0 340 aaPredicted RBP13.31□□□□□ -0.28
LIG3-214ENST00000592244 TTC6Q86TZ1 520 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 MIGA1Q8NAN2 632 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 CD99L2Q8TCZ2 262 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 YTHDC1Q96MU7 727 aaKnown RBP13.31□□□□□ -0.28
LIG3-214ENST00000592244 CRNKL1Q9BZJ0 848 aaKnown RBP13.31□□□□□ -0.28
LIG3-214ENST00000592244 PNMA3Q9UL41 463 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 SLC45A1Q9Y2W3 748 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 AFG3L2Q9Y4W6 797 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 AK9Q5TCS8 1911 aa13.31□□□□□ -0.28
LIG3-214ENST00000592244 MAGEB6P1A0A0J9YX57 407 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 TRIM75PA6NK02 468 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 USP17L5A8MUK1 530 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 KCNA4P22459 653 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 HOXD10P28358 340 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 CAP2P40123 477 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 RRP1P56182 461 aaKnown RBP13.3□□□□□ -0.28
LIG3-214ENST00000592244 MLLT1Q03111 559 aaPredicted RBP13.3□□□□□ -0.28
LIG3-214ENST00000592244 GADL1Q6ZQY3 521 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 ADGRA1Q86SQ6 560 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 DDRGK1Q96HY6 314 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 ANTXR1Q9H6X2 564 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 PAG1Q9NWQ8 432 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 OTOFQ9HC10 1997 aa13.3□□□□□ -0.28
LIG3-214ENST00000592244 PDE6AP16499 860 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 RGS19P49795 217 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 PRMT2P55345 433 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 DYNLL1P63167 89 aaKnown RBP13.29□□□□□ -0.28
LIG3-214ENST00000592244 NBPF11Q86T75 865 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 AMOTL1Q8IY63 956 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 ZNF280CQ8ND82 737 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 HAUS7Q99871 368 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 BOLA2Q9H3K6 86 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 DCTPP1Q9H773 170 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 PALD1Q9ULE6 856 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 NDUFB9Q9Y6M9 179 aa13.29□□□□□ -0.28
LIG3-214ENST00000592244 FAM196BA6NMK8 535 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 POLR3DP05423 398 aaPredicted RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 LACTBP83111 547 aaPredicted RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 AAMPQ13685 434 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 LRRFIP1Q32MZ4 808 aaKnown RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 METTL16Q86W50 562 aaKnown RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 PROCA1Q8NCQ7 364 aaPredicted RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 SMCR8Q8TEV9 937 aaPredicted RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 ECHDC1Q9NTX5 307 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 SAP30BPQ9UHR5 308 aaKnown RBP13.28□□□□□ -0.28
LIG3-214ENST00000592244 SERPINB13Q9UIV8 391 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 TAOK2Q9UL54 1235 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 AGTPBP1Q9UPW5 1226 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 PTPN22Q9Y2R2 807 aa13.28□□□□□ -0.28
LIG3-214ENST00000592244 MAST2Q6P0Q8 1798 aa13.27□□□□□ -0.28
LIG3-214ENST00000592244 SPP2Q13103 211 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 C17orf99Q6UX52 265 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 WDR18Q9BV38 432 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 EHD4Q9H223 541 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 TMOD4Q9NZQ9 345 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 ZNF532Q9HCE3 1301 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 LAMB1P07942 1786 aa13.27□□□□□ -0.29
LIG3-214ENST00000592244 C19orf81C9J6K1 198 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 ERC2O15083 957 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 FMNL1O95466 1100 aaPredicted RBP13.26□□□□□ -0.29
LIG3-214ENST00000592244 OSBPP22059 807 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 MOGSQ13724 837 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 GPAT2Q6NUI2 795 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 DOCK2Q92608 1830 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 RIOK1Q9BRS2 568 aaKnown RBP13.26□□□□□ -0.29
LIG3-214ENST00000592244 CABP5Q9NP86 173 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 CPA4Q9UI42 421 aa13.26□□□□□ -0.29
LIG3-214ENST00000592244 SMARCA5O60264 1052 aaPredicted RBP13.25□□□□□ -0.29
LIG3-214ENST00000592244 ADD2P35612 726 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 PSMC4P43686 418 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 FCGRTP55899 365 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 SOX10P56693 466 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 UBE3CQ15386 1083 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 SLC9C1Q4G0N8 1177 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 ATP8A2Q9NTI2 1148 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 MCM9Q9NXL9 1143 aa13.25□□□□□ -0.29
LIG3-214ENST00000592244 USP17L10C9JJH3 530 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 SLURP2P0DP57 97 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 CYP2C8P10632 490 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 GCLCP48506 637 aaPredicted RBP13.24□□□□□ -0.29
LIG3-214ENST00000592244 HMGCS2P54868 508 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 BACE1P56817 501 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 CERKLQ49MI3 558 aaPredicted RBP13.24□□□□□ -0.29
LIG3-214ENST00000592244 SH3D19Q5HYK7 790 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 TMEM106CQ9BVX2 250 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 ZBTB21Q9ULJ3 1066 aa13.24□□□□□ -0.29
LIG3-214ENST00000592244 TTC41PQ6P2S7 1318 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 TCRBV5S4A2TA0A5A2 114 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 GDF11O95390 407 aa13.23□□□□□ -0.29
LIG3-214ENST00000592244 ZFYP08048 801 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms