RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 DNAJA2O60884 412 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 RSPO4Q2I0M5 234 aaPredicted RBP4.81□□□□□ -1.64
ZNF540-207ENST00000589285 LLGL2Q6P1M3 1020 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 FANCD2OSQ96PS1 177 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 ANTXR1Q9H6X2 564 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 OSGEPQ9NPF4 335 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 HIF3AQ9Y2N7 669 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 ZMYM4Q5VZL5 1548 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 FAM135AQ9P2D6 1515 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 C9orf172C9J069 976 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 SART1O43290 800 aaKnown RBP4.81□□□□□ -1.64
ZNF540-207ENST00000589285 ARNTP27540 789 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 ASPAP45381 313 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 SOX4Q06945 474 aaPredicted RBP4.81□□□□□ -1.64
ZNF540-207ENST00000589285 PRSS36Q5K4E3 855 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 NT5DC4Q86YG4 428 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 PPP4R2Q9NY27 417 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 ADAMTS1Q9UHI8 967 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 CNTNAP4Q9C0A0 1308 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 ABCA9Q8IUA7 1624 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 FAM170BA6NMN3 283 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 UPK3BL1B0FP48 263 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 UPK3BL2E5RIL1 263 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 TIAF1O95411 115 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 NFKBIBQ15653 356 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 NKAPLQ5M9Q1 402 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 EXOSC6Q5RKV6 272 aaKnown RBP4.81□□□□□ -1.64
ZNF540-207ENST00000589285 BEND4Q6ZU67 534 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 FAM181AQ8N9Y4 354 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 PHC3Q8NDX5 983 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 RIN3Q8TB24 985 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 RRP7BPQ9NSQ0 103 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 KDM6BO15054 1643 aa4.81□□□□□ -1.64
ZNF540-207ENST00000589285 SAMD9Q5K651 1589 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 GAS2O43903 313 aaKnown RBP4.8□□□□□ -1.64
ZNF540-207ENST00000589285 RNGTTO60942 597 aaKnown RBP4.8□□□□□ -1.64
ZNF540-207ENST00000589285 NME2P22392 152 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 TMEM130Q8N3G9 435 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 ADAMTSL3P82987 1691 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 USP31Q70CQ4 1352 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 IQSEC2Q5JU85 1478 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 KIAA0556O60303 1618 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 LEFTY1O75610 366 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 HDLBPQ00341 1268 aaKnown RBP4.8□□□□□ -1.64
ZNF540-207ENST00000589285 PPP2R3AQ06190 1150 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 CCDC81Q6ZN84 652 aa4.8□□□□□ -1.64
ZNF540-207ENST00000589285 USP11P51784 963 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 CAMK2GQ13555 558 aaPredicted RBP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 MYRFLQ96LU7 910 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 C7orf69Q9H7B7 122 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 TGFB1P01137 390 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 CD96P40200 585 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 ZC3H12AQ5D1E8 599 aaKnown RBP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 ZNF765Q7L2R6 523 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 ISL2Q96A47 359 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 ACBD3Q9H3P7 528 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 FAM86C1Q9NVL1 165 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 DISP1Q96F81 1524 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 DYRK3O43781 588 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 MAP4P27816 1152 aaKnown RBP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 HOXA10P31260 410 aaPredicted RBP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 HNRNPMP52272 730 aaKnown RBP eCLIP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 METTL16Q86W50 562 aaKnown RBP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 FAM46AQ96IP4 442 aaKnown RBP4.79□□□□□ -1.64
ZNF540-207ENST00000589285 SRCIN1Q9C0H9 1055 aa4.79□□□□□ -1.64
ZNF540-207ENST00000589285 ZCCHC11Q5TAX3 1644 aaKnown RBP4.78□□□□□ -1.64
ZNF540-207ENST00000589285 POLR2BP30876 1174 aaKnown RBP4.78□□□□□ -1.64
ZNF540-207ENST00000589285 CRIM1Q9NZV1 1036 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 CFDP1Q9UEE9 299 aaPredicted RBP4.78□□□□□ -1.64
ZNF540-207ENST00000589285 PPT2Q9UMR5 302 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 CDK11AQ9UQ88 783 aaPredicted RBP4.78□□□□□ -1.64
ZNF540-207ENST00000589285 PCF11O94913 1555 aaKnown RBP4.78□□□□□ -1.64
ZNF540-207ENST00000589285 LOC100996750A0A140TA64 210 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 PIK3R2O00459 728 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 MED26O95402 600 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 AGMOQ6ZNB7 445 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 KRTAP4-6Q9BYQ5 205 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 PICK1Q9NRD5 415 aa4.78□□□□□ -1.64
ZNF540-207ENST00000589285 FMN1Q68DA7 1419 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 ZNF76P36508 570 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 PTPN12Q05209 780 aaKnown RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 PRR23CQ6ZRP0 262 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 CYP4F12Q9HCS2 524 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 KLHL3Q9UH77 587 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 ETF1P62495 437 aaKnown RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 COL19A1Q14993 1142 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 SEZ6Q53EL9 994 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 GK5Q6ZS86 529 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 USP48Q86UV5 1035 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 FAM20CQ8IXL6 584 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 ZNF296Q8WUU4 475 aaPredicted RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 RHOVQ96L33 236 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 STOML1Q9UBI4 398 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 UACAQ9BZF9 1416 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 XRCC5P13010 732 aaKnown RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 MLECQ14165 292 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 Q6ZS46 218 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 WNT8BQ93098 351 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 ELMO3Q96BJ8 720 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 NACC1Q96RE7 527 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms