RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 WRNIP1Q96S55 665 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 GINM1Q9NU53 330 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 ARPP21Q9UBL0 812 aaPredicted RBP11.46□□□□□ -0.57
CCDC40-214ENST00000575431 SERPINB13Q9UIV8 391 aa11.46□□□□□ -0.57
CCDC40-214ENST00000575431 NAV1Q8NEY1 1877 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 M0R2C6 588 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 CTNND1O60716 968 aaKnown RBP11.45□□□□□ -0.58
CCDC40-214ENST00000575431 SLC10A3P09131 477 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 GSPT1P15170 499 aaKnown RBP11.45□□□□□ -0.58
CCDC40-214ENST00000575431 VEGFBP49765 207 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 INHBEP58166 350 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 SBK1Q52WX2 424 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 BMP2KLQ5H9B9 411 aa11.45□□□□□ -0.58
CCDC40-214ENST00000575431 NOL9Q5SY16 702 aaKnown RBP11.45□□□□□ -0.58
CCDC40-214ENST00000575431 SAP30BPQ9UHR5 308 aaKnown RBP11.45□□□□□ -0.58
CCDC40-214ENST00000575431 SPDYE5A6NIY4 337 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 GSG1L2A8MUP6 293 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 PHF20L1A8MW92 1017 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 FAM155AB1AL88 458 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-214ENST00000575431 PRKAB2O43741 272 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 APPP05067 770 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 PPATQ06203 517 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 NMIQ13287 307 aaPredicted RBP11.44□□□□□ -0.58
CCDC40-214ENST00000575431 VGLL4Q14135 290 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 C12orf60Q5U649 245 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 SPRYD7Q5W111 196 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 ERO1BQ86YB8 467 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 RASAL3Q86YV0 1011 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 SCYL3Q8IZE3 742 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 JMYQ8N9B5 988 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 TBC1D2Q9BYX2 928 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 ZNF287Q9HBT7 754 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 PICK1Q9NRD5 415 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 SWAP70Q9UH65 585 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 FZD1Q9UP38 647 aa11.44□□□□□ -0.58
CCDC40-214ENST00000575431 DDX60LQ5H9U9 1706 aaKnown RBP11.43□□□□□ -0.58
CCDC40-214ENST00000575431 CCDC171Q6TFL3 1326 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 RAD50Q92878 1312 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 USP17L12C9JPN9 530 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 USP17L21D6R901 530 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 CAP2P40123 477 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 TDO2P48775 406 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 PLCD1P51178 756 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 MAP2K1Q02750 393 aaPredicted RBP11.43□□□□□ -0.58
CCDC40-214ENST00000575431 GRM1Q13255 1194 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 TATDN1Q6P1N9 297 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 CWC27Q6UX04 472 aaKnown RBP11.43□□□□□ -0.58
CCDC40-214ENST00000575431 IFNL3Q8IZI9 196 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 ZKSCAN4Q969J2 545 aaPredicted RBP11.43□□□□□ -0.58
CCDC40-214ENST00000575431 WNK4Q96J92 1243 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 FAM227BQ96M60 508 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 SEC62Q99442 399 aaKnown RBP11.43□□□□□ -0.58
CCDC40-214ENST00000575431 NAPBQ9H115 298 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 OTOFQ9HC10 1997 aa11.43□□□□□ -0.58
CCDC40-214ENST00000575431 THSD7BQ9C0I4 1608 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 A0A0D9SFI3 127 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 MANSC4A6NHS7 340 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-214ENST00000575431 SLC3A2P08195 630 aaKnown RBP11.42□□□□□ -0.58
CCDC40-214ENST00000575431 ASNSP08243 561 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 INPP5BP32019 993 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 KIF23Q02241 960 aaPredicted RBP11.42□□□□□ -0.58
CCDC40-214ENST00000575431 GABPAQ06546 454 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 SREBF2Q12772 1141 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 PPIL2Q13356 520 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 ALX1Q15699 326 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 CTR9Q6PD62 1173 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 OPTNQ96CV9 577 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 CLMNQ96JQ2 1002 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 CCDC17Q96LX7 622 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 ELP3Q9H9T3 547 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 SNCAIPQ9Y6H5 919 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 SIPA1L1O43166 1804 aa11.42□□□□□ -0.58
CCDC40-214ENST00000575431 ZMYM6O95789 1325 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 DOCK1Q14185 1865 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 CHMLP26374 656 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 GTF2A2P52657 109 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 CERKLQ49MI3 558 aaPredicted RBP11.41□□□□□ -0.58
CCDC40-214ENST00000575431 CASC1Q6TDU7 716 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 BEGAINQ9BUH8 593 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 AS3MTQ9HBK9 375 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 CABP5Q9NP86 173 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 LAMB1P07942 1786 aa11.41□□□□□ -0.58
CCDC40-214ENST00000575431 BAZ2AQ9UIF9 1905 aaKnown RBP11.41□□□□□ -0.58
CCDC40-214ENST00000575431 FAM196BA6NMK8 535 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 USP17L5A8MUK1 530 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 MINDY4BA8MYZ0 360 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 CXCL11O14625 94 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 CA12O43570 354 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 ALDH1A1P00352 501 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 HSPD1P10809 573 aaKnown RBP11.4□□□□□ -0.58
CCDC40-214ENST00000575431 PTPRAP18433 802 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 TM4SF4P48230 202 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 NT5C2P49902 561 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 PDE4BQ07343 736 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 OTUD7BQ6GQQ9 843 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 CCDC129Q6ZRS4 1044 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 C16orf86Q6ZW13 317 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 OTUD5Q96G74 571 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 DSCC1Q9BVC3 393 aa11.4□□□□□ -0.58
CCDC40-214ENST00000575431 DNAJC18Q9H819 358 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms