RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 MEI1Q5TIA1 1274 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 DIEXFQ68CQ4 756 aaKnown RBP5.58□□□□□ -1.52
NUP88-209ENST00000574855 LRFN4Q6PJG9 635 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 AGMOQ6ZNB7 445 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 ARHGAP27Q6ZUM4 889 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 CYFIP1Q7L576 1253 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 VSIG10LQ86VR7 867 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 KRTAP19-1Q8IUB9 90 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 FBXL18Q96ME1 805 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 FAM161BQ96MY7 647 aa5.58□□□□□ -1.52
NUP88-209ENST00000574855 NOC4LQ9BVI4 516 aaKnown RBP5.58□□□□□ -1.52
NUP88-209ENST00000574855 USP31Q70CQ4 1352 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 PRAMEF27A3QJZ7 478 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 LIG3P49916 1009 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 TP53INP2Q8IXH6 220 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 TOP6BLQ8N6T0 577 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 GAL3ST3Q96A11 431 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 PLPPR2Q96GM1 343 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 MIR1-1HGQ9H1L0 117 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 MKNK2Q9HBH9 465 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 PRDM10Q9NQV6 1147 aa5.57□□□□□ -1.52
NUP88-209ENST00000574855 ZBTB7CA1YPR0 619 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 CTSHP09668 335 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 ETF1P62495 437 aaKnown RBP5.56□□□□□ -1.52
NUP88-209ENST00000574855 WIPI1Q5MNZ9 446 aaPredicted RBP5.56□□□□□ -1.52
NUP88-209ENST00000574855 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.56□□□□□ -1.52
NUP88-209ENST00000574855 STK11IPQ8N1F8 1099 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 FAM181AQ8N9Y4 354 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 NETO1Q8TDF5 533 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 MISP3Q96FF7 219 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 CRELD1Q96HD1 420 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 WNT10AQ9GZT5 417 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 VTI1BQ9UEU0 232 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 GTF2IRD1Q9UHL9 959 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 SLC5A6Q9Y289 635 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 PCDHB5Q9Y5E4 795 aa5.56□□□□□ -1.52
NUP88-209ENST00000574855 COL17A1Q9UMD9 1497 aaPredicted RBP5.56□□□□□ -1.52
NUP88-209ENST00000574855 LRIG2O94898 1065 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 TAGLNQ01995 201 aaKnown RBP5.55□□□□□ -1.52
NUP88-209ENST00000574855 SEPT6Q14141 434 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 TSNAXIP1Q2TAA8 658 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 ZNF326Q5BKZ1 582 aaKnown RBP5.55□□□□□ -1.52
NUP88-209ENST00000574855 PLD6Q8N2A8 252 aaKnown RBP5.55□□□□□ -1.52
NUP88-209ENST00000574855 AGBL5Q8NDL9 886 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 FLCNQ8NFG4 579 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 BCL11AQ9H165 835 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 TACC3Q9Y6A5 838 aa5.55□□□□□ -1.52
NUP88-209ENST00000574855 GFRA2O00451 464 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 TFE3P19532 575 aaPredicted RBP5.54□□□□□ -1.52
NUP88-209ENST00000574855 IFI16Q16666 785 aaKnown RBP5.54□□□□□ -1.52
NUP88-209ENST00000574855 MCTP1Q6DN14 999 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 ARMCX6Q7L4S7 300 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 UBE3DQ7Z6J8 389 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 HID1Q8IV36 788 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 BCL7CQ8WUZ0 217 aaPredicted RBP5.54□□□□□ -1.52
NUP88-209ENST00000574855 JARID2Q92833 1246 aaPredicted RBP5.54□□□□□ -1.52
NUP88-209ENST00000574855 BCL2L13Q9BXK5 485 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 FOXQ1Q9C009 403 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 VAV3Q9UKW4 847 aa5.54□□□□□ -1.52
NUP88-209ENST00000574855 TMEM265A0A087WTH1 108 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 IGF2BP3O00425 579 aaKnown RBP eCLIP5.53□□□□□ -1.52
NUP88-209ENST00000574855 CAP2P40123 477 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 CDK8P49336 464 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 OXCT1P55809 520 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 PRKCQQ04759 706 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 SLBPQ14493 270 aaKnown RBP eCLIP5.53□□□□□ -1.52
NUP88-209ENST00000574855 LCE1DQ5T752 114 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 NFXL1Q6ZNB6 911 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 CCDC84Q86UT8 332 aaPredicted RBP5.53□□□□□ -1.52
NUP88-209ENST00000574855 RELL1Q8IUW5 271 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 ABI1Q8IZP0 508 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 MFSD2AQ8NA29 543 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 PHC3Q8NDX5 983 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 HEXIM2Q96MH2 286 aaKnown RBP5.53□□□□□ -1.52
NUP88-209ENST00000574855 PAK6Q9NQU5 681 aaPredicted RBP5.53□□□□□ -1.52
NUP88-209ENST00000574855 ADGRE2Q9UHX3 823 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 TLR6Q9Y2C9 796 aa5.53□□□□□ -1.52
NUP88-209ENST00000574855 GNAT3A8MTJ3 354 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 CEACAM5P06731 702 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 TAL1P17542 331 aaPredicted RBP5.52□□□□□ -1.53
NUP88-209ENST00000574855 GRK4P32298 578 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 RPL6Q02878 288 aaKnown RBP5.52□□□□□ -1.53
NUP88-209ENST00000574855 PWP1Q13610 501 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 FAM214BQ7L5A3 538 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 RSRP1Q9BUV0 290 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 FBRSQ9HAH7 460 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 PRDM5Q9NQX1 630 aaPredicted RBP5.52□□□□□ -1.53
NUP88-209ENST00000574855 SNX11Q9Y5W9 270 aa5.52□□□□□ -1.53
NUP88-209ENST00000574855 BPNT1O95861 308 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 EOMESO95936 686 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 ITIH2P19823 946 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 PDE4BQ07343 736 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 BNIP3Q12983 259 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 CAMK2GQ13555 558 aaPredicted RBP5.51□□□□□ -1.53
NUP88-209ENST00000574855 NKG7Q16617 165 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 AOC3Q16853 763 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 TMCO4Q5TGY1 634 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 SPRED2Q7Z698 418 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 GIPC2Q8TF65 315 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 HRASLS5Q96KN8 279 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms