RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 C1orf229Q6ZS94 237 aaPredicted RBP8.11□□□□□ -1.11
VPS53-212ENST00000572259 CCNJLQ8IV13 435 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 NXPE3Q969Y0 559 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 LPIN3Q9BQK8 851 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 JPH1Q9HDC5 661 aaPredicted RBP8.11□□□□□ -1.11
VPS53-212ENST00000572259 LRRC4BQ9NT99 713 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 NAGPAQ9UK23 515 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 SUGT1Q9Y2Z0 365 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 KNDC1Q76NI1 1749 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 NFKBIEO00221 500 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 TPD52L2O43399 206 aaKnown RBP8.1□□□□□ -1.11
VPS53-212ENST00000572259 CELA2BP08218 269 aaPredicted RBP8.1□□□□□ -1.11
VPS53-212ENST00000572259 USP17L7P0C7H9 530 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 GSTT1P30711 240 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 MRPL58Q14197 206 aaKnown RBP8.1□□□□□ -1.11
VPS53-212ENST00000572259 LCE2CQ5TA81 110 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 LYPD4Q6UWN0 246 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 CHSY3Q70JA7 882 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 BRINP3Q76B58 766 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 LRRC59Q96AG4 307 aaKnown RBP8.1□□□□□ -1.11
VPS53-212ENST00000572259 BTBD6Q96KE9 485 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 PRAM1Q96QH2 718 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 HHIPQ96QV1 700 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 TANGO6Q9C0B7 1094 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 LNPKQ9C0E8 428 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 ZFYVE1Q9HBF4 777 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 ENAMQ9NRM1 1142 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 TONSLQ96HA7 1378 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 DISP3Q9P2K9 1392 aa8.1□□□□□ -1.11
VPS53-212ENST00000572259 PHLPP1O60346 1717 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 KIAA1210Q9ULL0 1709 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 TMEM238LA0A1B0GVL6 79 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 TLDC2A0PJX2 215 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 LILRB5O75023 590 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 XRCC5P13010 732 aaKnown RBP8.09□□□□□ -1.11
VPS53-212ENST00000572259 PTPRAP18433 802 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 SAFB2Q14151 953 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS53-212ENST00000572259 GDF6Q6KF10 455 aaPredicted RBP8.09□□□□□ -1.11
VPS53-212ENST00000572259 PRPF40BQ6NWY9 871 aaKnown RBP8.09□□□□□ -1.11
VPS53-212ENST00000572259 TMEM87AQ8NBN3 555 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 NEDD1Q8NHV4 660 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 TTC9Q92623 222 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 TCF12Q99081 682 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 POP1Q99575 1024 aaKnown RBP8.09□□□□□ -1.11
VPS53-212ENST00000572259 BHLHE41Q9C0J9 482 aaPredicted RBP8.09□□□□□ -1.11
VPS53-212ENST00000572259 LACRTQ9GZZ8 138 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 AKAP2Q9Y2D5 859 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 MST1RQ04912 1400 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 NALCNQ8IZF0 1738 aa8.09□□□□□ -1.11
VPS53-212ENST00000572259 EIF3AQ14152 1382 aaKnown RBP8.09□□□□□ -1.12
VPS53-212ENST00000572259 JCADQ9P266 1359 aa8.09□□□□□ -1.12
VPS53-212ENST00000572259 A0A096LPE4 126 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 A0A1W2PPZ6 126 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 M0R082 166 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 SCAMP3O14828 347 aaKnown RBP8.08□□□□□ -1.12
VPS53-212ENST00000572259 CACTIN-AS1Q8N1I8 211 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 SVOPQ8N4V2 548 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 GLIS3Q8NEA6 775 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 ZNF417Q8TAU3 575 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 ZNF587Q96SQ5 575 aaPredicted RBP8.08□□□□□ -1.12
VPS53-212ENST00000572259 DNAJC2Q99543 621 aaKnown RBP8.08□□□□□ -1.12
VPS53-212ENST00000572259 BACH2Q9BYV9 841 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 RRAGCQ9HB90 399 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS53-212ENST00000572259 TRIM33Q9UPN9 1127 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 STARD13Q9Y3M8 1113 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 SBNO2Q9Y2G9 1366 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 DLC1Q96QB1 1528 aa8.08□□□□□ -1.12
VPS53-212ENST00000572259 C1orf167Q5SNV9 1468 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 NPHP3Q7Z494 1330 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 CLSPNQ9HAW4 1339 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 METTL12A8MUP2 240 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 SHISA8B8ZZ34 492 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 ALBP02768 609 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 GRIA4P48058 902 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 SPRED3Q2MJR0 410 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 BSNDQ8WZ55 320 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 ARMC5Q96C12 935 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 CRELD1Q96HD1 420 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 ABCB6Q9NP58 842 aa8.07□□□□□ -1.12
VPS53-212ENST00000572259 SPATA31A6Q5VVP1 1343 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 CDC42BPGQ6DT37 1551 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 CDC27P30260 824 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 CABP4P57796 275 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 IGBP1P78318 339 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 MEX3CQ5U5Q3 659 aaKnown RBP8.06□□□□□ -1.12
VPS53-212ENST00000572259 SDE2Q6IQ49 451 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 C20orf204Q6ZNR8 217 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 WHAMMQ8TF30 809 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 ORAI2Q96SN7 254 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 ASXL1Q8IXJ9 1541 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 AHDC1Q5TGY3 1603 aaPredicted RBP8.06□□□□□ -1.12
VPS53-212ENST00000572259 PLEKHH1Q9ULM0 1364 aa8.06□□□□□ -1.12
VPS53-212ENST00000572259 ADGRB1O14514 1584 aa8.05□□□□□ -1.12
VPS53-212ENST00000572259 hCG_2014768A0A024R1R8 64 aa8.05□□□□□ -1.12
VPS53-212ENST00000572259 HDLBPQ00341 1268 aaKnown RBP8.05□□□□□ -1.12
VPS53-212ENST00000572259 EGFLAMQ63HQ2 1017 aa8.05□□□□□ -1.12
VPS53-212ENST00000572259 IL22RA1Q8N6P7 574 aa8.05□□□□□ -1.12
VPS53-212ENST00000572259 TTF2Q9UNY4 1162 aaKnown RBP8.05□□□□□ -1.12
VPS53-212ENST00000572259 ROCK2O75116 1388 aaKnown RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms