RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 WRNIP1Q96S55 665 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 PTPN18Q99952 460 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 IL25Q9H293 177 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 DCP1AQ9NPI6 582 aaPredicted RBP11.93□□□□□ -0.5
CLN3-220ENST00000566040 SAP30BPQ9UHR5 308 aaKnown RBP11.93□□□□□ -0.5
CLN3-220ENST00000566040 MYH4Q9Y623 1939 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 A0A0G2JMZ2 1700 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 CYP2D7A0A087X1C5 515 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 IGF2BP3O00425 579 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLN3-220ENST00000566040 RNF113AO15541 343 aaKnown RBP11.92□□□□□ -0.5
CLN3-220ENST00000566040 PPP1R12BO60237 982 aaPredicted RBP11.92□□□□□ -0.5
CLN3-220ENST00000566040 TBC1D12O60347 775 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 BAG3O95817 575 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 PLCG2P16885 1265 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 IREB2P48200 963 aaKnown RBP11.92□□□□□ -0.5
CLN3-220ENST00000566040 PLCD1P51178 756 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 SLC4A8Q2Y0W8 1093 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 PAXIP1Q6ZW49 1069 aaPredicted RBP11.92□□□□□ -0.5
CLN3-220ENST00000566040 APPBP2Q92624 585 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 CCDC102AQ96A19 550 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 OPTNQ96CV9 577 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 GPATCH3Q96I76 525 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 STRBPQ96SI9 672 aaKnown RBP11.92□□□□□ -0.5
CLN3-220ENST00000566040 ZNF341Q9BYN7 854 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 R3HDMLQ9H3Y0 253 aa11.92□□□□□ -0.5
CLN3-220ENST00000566040 A0A0D9SFI3 127 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 TESPA1A2RU30 521 aaPredicted RBP11.91□□□□□ -0.5
CLN3-220ENST00000566040 GSG1L2A8MUP6 293 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 ZBTB48P10074 688 aaPredicted RBP11.91□□□□□ -0.5
CLN3-220ENST00000566040 HSPA8P11142 646 aaKnown RBP11.91□□□□□ -0.5
CLN3-220ENST00000566040 SHMT1P34896 483 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 TM4SF4P48230 202 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 TSKSQ9UJT2 592 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 TACC3Q9Y6A5 838 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 ROBO3Q96MS0 1386 aa11.91□□□□□ -0.5
CLN3-220ENST00000566040 IRF6O14896 467 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 ERC2O15083 957 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 CAP1Q01518 475 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 DCAF15Q66K64 600 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 CCDC129Q6ZRS4 1044 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 SLC44A5Q8NCS7 719 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 BRI3BPQ8WY22 251 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 FAM227BQ96M60 508 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 EHD4Q9H223 541 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 KCNH4Q9UQ05 1017 aa11.9□□□□□ -0.5
CLN3-220ENST00000566040 PLXNB2O15031 1838 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 COL11A1P12107 1806 aaPredicted RBP11.89□□□□□ -0.51
CLN3-220ENST00000566040 GPAA1O43292 621 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 PTPRAP18433 802 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 GUCY1A2P33402 732 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 PPIL2Q13356 520 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 VPS53Q5VIR6 699 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 TATDN1Q6P1N9 297 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 ZNF589Q86UQ0 364 aaPredicted RBP11.89□□□□□ -0.51
CLN3-220ENST00000566040 CERS3Q8IU89 383 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 SCYL3Q8IZE3 742 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 SLC10A4Q96EP9 437 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 OTUD5Q96G74 571 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.89□□□□□ -0.51
CLN3-220ENST00000566040 RNF186Q9NXI6 227 aa11.89□□□□□ -0.51
CLN3-220ENST00000566040 ADGRA2Q96PE1 1338 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 CAP2P40123 477 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 NMIQ13287 307 aaPredicted RBP11.88□□□□□ -0.51
CLN3-220ENST00000566040 DGKZQ13574 1117 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 TTC22Q5TAA0 569 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 ERO1BQ86YB8 467 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 ZSCAN29Q8IWY8 852 aaPredicted RBP11.88□□□□□ -0.51
CLN3-220ENST00000566040 NKX2-3Q8TAU0 364 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 EVI5LQ96CN4 794 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 DYNLL2Q96FJ2 89 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 NOL10Q9BSC4 688 aaKnown RBP11.88□□□□□ -0.51
CLN3-220ENST00000566040 FSD1Q9BTV5 496 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 CFHR5Q9BXR6 569 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 CRNKL1Q9BZJ0 848 aaKnown RBP11.88□□□□□ -0.51
CLN3-220ENST00000566040 DHX36Q9H2U1 1008 aaKnown RBP11.88□□□□□ -0.51
CLN3-220ENST00000566040 PI4KBQ9UBF8 816 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 HERC5Q9UII4 1024 aaKnown RBP11.88□□□□□ -0.51
CLN3-220ENST00000566040 AFG3L2Q9Y4W6 797 aa11.88□□□□□ -0.51
CLN3-220ENST00000566040 DOCK3Q8IZD9 2030 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 CTNND1O60716 968 aaKnown RBP11.87□□□□□ -0.51
CLN3-220ENST00000566040 GDF11O95390 407 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 ZFYP08048 801 aaPredicted RBP11.87□□□□□ -0.51
CLN3-220ENST00000566040 USP5P45974 858 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 MAP2K1Q02750 393 aaPredicted RBP11.87□□□□□ -0.51
CLN3-220ENST00000566040 C12orf60Q5U649 245 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 GPAT2Q6NUI2 795 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 CTR9Q6PD62 1173 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 IFNL1Q8IU54 200 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 FAM43AQ8N2R8 423 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 HOOK2Q96ED9 719 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLN3-220ENST00000566040 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.87□□□□□ -0.51
CLN3-220ENST00000566040 SLC4A4Q9Y6R1 1079 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 CENPFP49454 3210 aa11.87□□□□□ -0.51
CLN3-220ENST00000566040 USP17L12C9JPN9 530 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 USP17L21D6R901 530 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 SDSP20132 328 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 PPATQ06203 517 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 ZSCAN25Q6NSZ9 544 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 AIDAQ96BJ3 306 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms