RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 FOXP4Q8IVH2 680 aaPredicted RBP10.3□□□□□ -0.76
USP3-217ENST00000560070 APPBP2Q92624 585 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 EVI5LQ96CN4 794 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 CCDC136Q96JN2 1154 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 PICK1Q9NRD5 415 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 PI4KBQ9UBF8 816 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 ZNF112Q9UJU3 913 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 SNCAIPQ9Y6H5 919 aa10.3□□□□□ -0.76
USP3-217ENST00000560070 CYP2D7A0A087X1C5 515 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 TBC1D8O95759 1140 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 ZFYP08048 801 aaPredicted RBP10.29□□□□□ -0.76
USP3-217ENST00000560070 LRRFIP1Q32MZ4 808 aaKnown RBP10.29□□□□□ -0.76
USP3-217ENST00000560070 CCDC129Q6ZRS4 1044 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 TTC6Q86TZ1 520 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 DYNLL2Q96FJ2 89 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 STRBPQ96SI9 672 aaKnown RBP10.29□□□□□ -0.76
USP3-217ENST00000560070 DHX36Q9H2U1 1008 aaKnown RBP10.29□□□□□ -0.76
USP3-217ENST00000560070 RNF186Q9NXI6 227 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 ZHX2Q9Y6X8 837 aa10.29□□□□□ -0.76
USP3-217ENST00000560070 USP17L12C9JPN9 530 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 USP17L21D6R901 530 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 SMIM22K7EJ46 135 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 TBC1D12O60347 775 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 GDF11O95390 407 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 LBX1P52954 281 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 JAG1P78504 1218 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 MAP3K10Q02779 954 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 SHROOM1Q2M3G4 852 aaPredicted RBP10.28□□□□□ -0.76
USP3-217ENST00000560070 TMED8Q6PL24 325 aaPredicted RBP10.28□□□□□ -0.76
USP3-217ENST00000560070 ERO1BQ86YB8 467 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 CERS3Q8IU89 383 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 FAM227BQ96M60 508 aa10.28□□□□□ -0.76
USP3-217ENST00000560070 DCP1AQ9NPI6 582 aaPredicted RBP10.28□□□□□ -0.76
USP3-217ENST00000560070 RFX7Q2KHR2 1363 aa10.27□□□□□ -0.76
USP3-217ENST00000560070 CCL15-CCL14A0A0B4J2E2 113 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 MANSC4A6NHS7 340 aaPredicted RBP10.27□□□□□ -0.77
USP3-217ENST00000560070 SPDYE5A6NIY4 337 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 UNCXA6NJT0 531 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 GSG1L2A8MUP6 293 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 MINDY4BA8MYZ0 360 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 IRF6O14896 467 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 GPAA1O43292 621 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 CTNND1O60716 968 aaKnown RBP10.27□□□□□ -0.77
USP3-217ENST00000560070 PTPRAP18433 802 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 SDSP20132 328 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 TM4SF4P48230 202 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 NMIQ13287 307 aaPredicted RBP10.27□□□□□ -0.77
USP3-217ENST00000560070 CCL15Q16663 113 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 ZMYM1Q5SVZ6 1142 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 CTR9Q6PD62 1173 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 SCYL3Q8IZE3 742 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 DDRGK1Q96HY6 314 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 OSBPL3Q9H4L5 887 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 DNAJC18Q9H819 358 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 ATP8A2Q9NTI2 1148 aa10.27□□□□□ -0.77
USP3-217ENST00000560070 TRIM75PA6NK02 468 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 PATL2C9JE40 543 aaKnown RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 MPHOSPH10O00566 681 aaKnown RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 ZBTB48P10074 688 aaPredicted RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 CAP2P40123 477 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 TDO2P48775 406 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 CTCFP49711 727 aaPredicted RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 GTF2A2P52657 109 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 PPATQ06203 517 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 SREBF2Q12772 1141 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 NOL9Q5SY16 702 aaKnown RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 SAMD1Q6SPF0 538 aaPredicted RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 CENPQQ7L2Z9 268 aaPredicted RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 SLC44A5Q8NCS7 719 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 BRI3BPQ8WY22 251 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 MS4A4AQ96JQ5 239 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 PTPN18Q99952 460 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 R3HDMLQ9H3Y0 253 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 HERC5Q9UII4 1024 aaKnown RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 SERPINB13Q9UIV8 391 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 ZNF646O15015 1829 aaPredicted RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 ATRNL1Q5VV63 1379 aa10.26□□□□□ -0.77
USP3-217ENST00000560070 RPAP1Q9BWH6 1393 aaPredicted RBP10.26□□□□□ -0.77
USP3-217ENST00000560070 A0A0D9SFI3 127 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 USP17L5A8MUK1 530 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 IGF2BP3O00425 579 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP3-217ENST00000560070 ECM2O94769 699 aaPredicted RBP10.25□□□□□ -0.77
USP3-217ENST00000560070 GH2P01242 217 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 HSPA8P11142 646 aaKnown RBP10.25□□□□□ -0.77
USP3-217ENST00000560070 CETPP11597 493 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 GSPT1P15170 499 aaKnown RBP10.25□□□□□ -0.77
USP3-217ENST00000560070 INHBEP58166 350 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 SPP2Q13103 211 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 PPIL2Q13356 520 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 SNAPC2Q13487 334 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 RAB3GAP1Q15042 981 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 CERKLQ49MI3 558 aaPredicted RBP10.25□□□□□ -0.77
USP3-217ENST00000560070 MCMDC2Q4G0Z9 681 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 TTC22Q5TAA0 569 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 CWC27Q6UX04 472 aaKnown RBP10.25□□□□□ -0.77
USP3-217ENST00000560070 GADL1Q6ZQY3 521 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 IFNL1Q8IU54 200 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 AMOTL1Q8IY63 956 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 IFNL3Q8IZI9 196 aa10.25□□□□□ -0.77
USP3-217ENST00000560070 DIAPH3Q9NSV4 1193 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms