RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ZMYM1Q5SVZ6 1142 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 ERICH6BQ5W0A0 696 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 SPRYD7Q5W111 196 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 TTC6Q86TZ1 520 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 FOXP4Q8IVH2 680 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-228ENST00000557302 CRACR2BQ8N4Y2 399 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-228ENST00000557302 DDRGK1Q96HY6 314 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 STRBPQ96SI9 672 aaKnown RBP16.33■□□□□ 0.2
SHMT2-228ENST00000557302 TRIM34Q9BYJ4 488 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 ATP8A2Q9NTI2 1148 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 MCM9Q9NXL9 1143 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 SNCAIPQ9Y6H5 919 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 SLC4A4Q9Y6R1 1079 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 THSD7BQ9C0I4 1608 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 FOCADQ5VW36 1801 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 CDK5RAP2Q96SN8 1893 aa16.33■□□□□ 0.2
SHMT2-228ENST00000557302 FAM196BA6NMK8 535 aa16.32■□□□□ 0.2
SHMT2-228ENST00000557302 M0R2C6 588 aa16.32■□□□□ 0.2
SHMT2-228ENST00000557302 GPAA1O43292 621 aa16.32■□□□□ 0.2
SHMT2-228ENST00000557302 POLR3DP05423 398 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-228ENST00000557302 ZBTB48P10074 688 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-228ENST00000557302 NOL9Q5SY16 702 aaKnown RBP16.32■□□□□ 0.2
SHMT2-228ENST00000557302 TTC22Q5TAA0 569 aa16.32■□□□□ 0.2
SHMT2-228ENST00000557302 OPTNQ96CV9 577 aa16.32■□□□□ 0.2
SHMT2-228ENST00000557302 OTOFQ9HC10 1997 aa16.32■□□□□ 0.2
SHMT2-228ENST00000557302 SPDYE5A6NIY4 337 aa16.31■□□□□ 0.2
SHMT2-228ENST00000557302 GNAT2P19087 354 aa16.31■□□□□ 0.2
SHMT2-228ENST00000557302 METTL16Q86W50 562 aaKnown RBP16.31■□□□□ 0.2
SHMT2-228ENST00000557302 ERO1BQ86YB8 467 aa16.31■□□□□ 0.2
SHMT2-228ENST00000557302 REM2Q8IYK8 340 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-228ENST00000557302 SCYL3Q8IZE3 742 aa16.31■□□□□ 0.2
SHMT2-228ENST00000557302 SEC62Q99442 399 aaKnown RBP16.31■□□□□ 0.2
SHMT2-228ENST00000557302 EHD4Q9H223 541 aa16.31■□□□□ 0.2
SHMT2-228ENST00000557302 SERPINB13Q9UIV8 391 aa16.31■□□□□ 0.2
SHMT2-228ENST00000557302 CTNND1O60716 968 aaKnown RBP16.3■□□□□ 0.2
SHMT2-228ENST00000557302 HSPA1AP0DMV8 641 aaKnown RBP16.3■□□□□ 0.2
SHMT2-228ENST00000557302 HSPA1BP0DMV9 641 aaKnown RBP16.3■□□□□ 0.2
SHMT2-228ENST00000557302 GJA5P36382 358 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 COL13A1Q5TAT6 717 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-228ENST00000557302 AMOTL1Q8IY63 956 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 OTUD5Q96G74 571 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 BEGAINQ9BUH8 593 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 DNAJC18Q9H819 358 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 PICK1Q9NRD5 415 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 HELLSQ9NRZ9 838 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 WBP1LQ9NX94 342 aa16.3■□□□□ 0.2
SHMT2-228ENST00000557302 NAV1Q8NEY1 1877 aa16.29■□□□□ 0.2
SHMT2-228ENST00000557302 GSPT1P15170 499 aaKnown RBP16.29■□□□□ 0.2
SHMT2-228ENST00000557302 PLCD1P51178 756 aa16.29■□□□□ 0.2
SHMT2-228ENST00000557302 PPATQ06203 517 aa16.29■□□□□ 0.2
SHMT2-228ENST00000557302 SREBF2Q12772 1141 aa16.29■□□□□ 0.2
SHMT2-228ENST00000557302 GIMAP6Q6P9H5 292 aa16.29■□□□□ 0.2
SHMT2-228ENST00000557302 PPP4R2Q9NY27 417 aa16.29■□□□□ 0.2
SHMT2-228ENST00000557302 DDX60LQ5H9U9 1706 aaKnown RBP16.28■□□□□ 0.2
SHMT2-228ENST00000557302 MYH1P12882 1939 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 A0A0D9SFI3 127 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 MANSC4A6NHS7 340 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-228ENST00000557302 GSG1L2A8MUP6 293 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 HIP1O00291 1037 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 APPP05067 770 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 SDSP20132 328 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 NMIQ13287 307 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-228ENST00000557302 PPIL2Q13356 520 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 FAM227BQ96M60 508 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 DIAPH3Q9NSV4 1193 aa16.28■□□□□ 0.2
SHMT2-228ENST00000557302 SIPA1L1O43166 1804 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 PATL2C9JE40 543 aaKnown RBP16.27■□□□□ 0.2
SHMT2-228ENST00000557302 USP17L12C9JPN9 530 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 USP17L21D6R901 530 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 CYP2D6P10635 497 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 CAP2P40123 477 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 GTF2A2P52657 109 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 MCMDC2Q4G0Z9 681 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 C12orf60Q5U649 245 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 CCDC129Q6ZRS4 1044 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 NACAP1Q9BZK3 213 aa16.27■□□□□ 0.2
SHMT2-228ENST00000557302 ARPP21Q9UBL0 812 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-228ENST00000557302 IRF6O14896 467 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 PTPRAP18433 802 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 TM4SF4P48230 202 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 TDO2P48775 406 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 INHBEP58166 350 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 RRP1BQ14684 758 aaKnown RBP16.26■□□□□ 0.19
SHMT2-228ENST00000557302 CTR9Q6PD62 1173 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 EPB41L4AQ9HCS5 686 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-228ENST00000557302 TAOK2Q9UL54 1235 aa16.26■□□□□ 0.19
SHMT2-228ENST00000557302 CYP2D7A0A087X1C5 515 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 CA12O43570 354 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 GDF11O95390 407 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 ASNSP08243 561 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 EVX2Q03828 476 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 GABPAQ06546 454 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 SNAPC2Q13487 334 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 TATDN1Q6P1N9 297 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 MS4A4AQ96JQ5 239 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 GINM1Q9NU53 330 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 SWAP70Q9UH65 585 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 ZHX2Q9Y6X8 837 aa16.25■□□□□ 0.19
SHMT2-228ENST00000557302 CCL15-CCL14A0A0B4J2E2 113 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 CETPP11597 493 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms