RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 MAP3K9P80192 1104 aa17.43■□□□□ 0.38
SHMT2-208ENST00000553868 LRRFIP1Q32MZ4 808 aaKnown RBP17.43■□□□□ 0.38
SHMT2-208ENST00000553868 CAVIN4Q5BKX8 364 aa17.43■□□□□ 0.38
SHMT2-208ENST00000553868 TDHQ8IZJ6 230 aa17.43■□□□□ 0.38
SHMT2-208ENST00000553868 DEFB118Q96PH6 123 aa17.43■□□□□ 0.38
SHMT2-208ENST00000553868 GNL3LQ9NVN8 582 aaKnown RBP17.43■□□□□ 0.38
SHMT2-208ENST00000553868 JAG2Q9Y219 1238 aa17.43■□□□□ 0.38
SHMT2-208ENST00000553868 ARAP2Q8WZ64 1704 aa17.43■□□□□ 0.38
SHMT2-208ENST00000553868 RFX7Q2KHR2 1363 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 MAP4K4O95819 1239 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-208ENST00000553868 HOXD10P28358 340 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 CCDC102BQ68D86 513 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.42■□□□□ 0.385e-6■■□□□ 11.5
SHMT2-208ENST00000553868 RUFY2Q8WXA3 655 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 TEPSINQ96N21 525 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 DNAJC2Q99543 621 aaKnown RBP17.42■□□□□ 0.38
SHMT2-208ENST00000553868 FSD1Q9BTV5 496 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 GABRQQ9UN88 632 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 IRS2Q9Y4H2 1338 aa17.42■□□□□ 0.38
SHMT2-208ENST00000553868 CETPP11597 493 aa17.41■□□□□ 0.38
SHMT2-208ENST00000553868 CHMLP26374 656 aa17.41■□□□□ 0.38
SHMT2-208ENST00000553868 ARID4AP29374 1257 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-208ENST00000553868 RBM5P52756 815 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHMT2-208ENST00000553868 CD209Q9NNX6 404 aa17.41■□□□□ 0.38
SHMT2-208ENST00000553868 DIAPH3Q9NSV4 1193 aa17.41■□□□□ 0.38
SHMT2-208ENST00000553868 PAG1Q9NWQ8 432 aa17.41■□□□□ 0.38
SHMT2-208ENST00000553868 CSADQ9Y600 493 aa17.41■□□□□ 0.38
SHMT2-208ENST00000553868 SPDYE5A6NIY4 337 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 SNAP23O00161 211 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 IRF6O14896 467 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 REC8O95072 547 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 ELNP15502 786 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 TTF1Q15361 905 aaPredicted RBP17.4■□□□□ 0.38
SHMT2-208ENST00000553868 VPS37DQ86XT2 251 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 TMEM39BQ9GZU3 492 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 SNCAIPQ9Y6H5 919 aa17.4■□□□□ 0.38
SHMT2-208ENST00000553868 PHKA1P46020 1223 aa17.39■□□□□ 0.37
SHMT2-208ENST00000553868 MFAP1P55081 439 aaKnown RBP17.39■□□□□ 0.37
SHMT2-208ENST00000553868 KBTBD3Q8NAB2 608 aa17.39■□□□□ 0.37
SHMT2-208ENST00000553868 ZNF70Q9UC06 446 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-208ENST00000553868 CDH23Q9H251 3354 aa17.39■□□□□ 0.37
SHMT2-208ENST00000553868 A0A1B0GUL6 1792 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 TCP10L2B9ZVM9 353 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 GOLIM4O00461 696 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 SEMA3EO15041 775 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 INHAP05111 366 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 C15orf52Q6ZUT6 534 aaKnown RBP17.38■□□□□ 0.37
SHMT2-208ENST00000553868 SLAIN1Q8ND83 568 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 ZKSCAN4Q969J2 545 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-208ENST00000553868 UBE2OQ9C0C9 1292 aaKnown RBP17.38■□□□□ 0.37
SHMT2-208ENST00000553868 TDRD3Q9H7E2 651 aaKnown RBP17.38■□□□□ 0.37
SHMT2-208ENST00000553868 ZCCHC17Q9NP64 241 aaKnown RBP17.38■□□□□ 0.37
SHMT2-208ENST00000553868 ADGRA2Q96PE1 1338 aa17.38■□□□□ 0.37
SHMT2-208ENST00000553868 ZBTB22O15209 634 aa17.37■□□□□ 0.37
SHMT2-208ENST00000553868 ADCY3O60266 1144 aa17.37■□□□□ 0.37
SHMT2-208ENST00000553868 SNAPC2Q13487 334 aa17.37■□□□□ 0.37
SHMT2-208ENST00000553868 SPDYE2Q495Y8 402 aa17.37■□□□□ 0.37
SHMT2-208ENST00000553868 ESYT1Q9BSJ8 1104 aa17.37■□□□□ 0.37
SHMT2-208ENST00000553868 RBM19Q9Y4C8 960 aaKnown RBP17.37■□□□□ 0.37
SHMT2-208ENST00000553868 MGAMO43451 1857 aa17.37■□□□□ 0.37
SHMT2-208ENST00000553868 SEC24BO95487 1268 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 ZFYP08048 801 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-208ENST00000553868 HIBADHP31937 336 aaKnown RBP17.36■□□□□ 0.37
SHMT2-208ENST00000553868 MCAMP43121 646 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 ZSCAN25Q6NSZ9 544 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 ZNF804AQ7Z570 1209 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 NECAB2Q7Z6G3 386 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 ERO1BQ86YB8 467 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 SPATA5Q8NB90 893 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.36■□□□□ 0.37
SHMT2-208ENST00000553868 AK9Q5TCS8 1911 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 RAD50Q92878 1312 aa17.36■□□□□ 0.37
SHMT2-208ENST00000553868 POTEB2H3BUK9 544 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 PDHXO00330 501 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 EPB41L2O43491 1005 aaKnown RBP17.35■□□□□ 0.37
SHMT2-208ENST00000553868 ZAP70P43403 619 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 GYG1P46976 350 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 FBXO33Q7Z6M2 555 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 FAM84BQ96KN1 310 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-208ENST00000553868 CRISPLD2Q9H0B8 497 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 PAK6Q9NQU5 681 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-208ENST00000553868 SNRKQ9NRH2 765 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 DENND2AQ9ULE3 1009 aa17.35■□□□□ 0.37
SHMT2-208ENST00000553868 PDS5AQ29RF7 1337 aaKnown RBP17.35■□□□□ 0.37
SHMT2-208ENST00000553868 FRAT2O75474 233 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-208ENST00000553868 FCGRTP55899 365 aa17.34■□□□□ 0.37
SHMT2-208ENST00000553868 TNFAIP1Q13829 316 aa17.34■□□□□ 0.37
SHMT2-208ENST00000553868 RASGRF1Q13972 1273 aa17.34■□□□□ 0.37
SHMT2-208ENST00000553868 KIAA1211Q6ZU35 1233 aa17.34■□□□□ 0.37
SHMT2-208ENST00000553868 EDC3Q96F86 508 aaKnown RBP17.34■□□□□ 0.37
SHMT2-208ENST00000553868 WRNIP1Q96S55 665 aa17.34■□□□□ 0.37
SHMT2-208ENST00000553868 HMG20BQ9P0W2 317 aa17.34■□□□□ 0.37
SHMT2-208ENST00000553868 SGSM2O43147 1006 aa17.33■□□□□ 0.36
SHMT2-208ENST00000553868 FLT3LGP49771 235 aa17.33■□□□□ 0.36
SHMT2-208ENST00000553868 PPIL2Q13356 520 aa17.33■□□□□ 0.36
SHMT2-208ENST00000553868 CWC27Q6UX04 472 aaKnown RBP17.33■□□□□ 0.36
SHMT2-208ENST00000553868 C22orf23Q9BZE7 217 aa17.33■□□□□ 0.36
SHMT2-208ENST00000553868 IGSF3O75054 1194 aa17.32■□□□□ 0.36
SHMT2-208ENST00000553868 ANP32AP39687 249 aaKnown RBP17.32■□□□□ 0.36
SHMT2-208ENST00000553868 TBC1D32Q96NH3 1257 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms